Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B03
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    27   3.6  
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    27   4.7  
06_03_0842 + 25307509-25308049,25308507-25308659,25308770-253089...    27   4.7  
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814...    26   8.3  

>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 315 RPMFEMPSQLPLVKRPHGRWPLLRS 241
           +P  E+    P+VKR H  W LL S
Sbjct: 103 KPFHELDHAPPVVKRAHSSWALLPS 127


>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 186 NYYTKSISTNRARGARDHGSLIVAIAR 266
           N  +  I   R RGARDHGS +  + R
Sbjct: 560 NRRSTRIGMERPRGARDHGSEVPRVLR 586


>06_03_0842 +
           25307509-25308049,25308507-25308659,25308770-25308973,
           25309056-25309521,25309614-25309746
          Length = 498

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 146 IALVTLPTIMYFEQLLHQININ**STWGSRSWLLNSGHRPWGRLTRGS*LGISNIG 313
           +AL+T  +I    +  HQ  I       S  WL+   +  WGR+   + + I+NIG
Sbjct: 122 VALLTEASIDMLVRCSHQGKIT------SYGWLMGEAYGQWGRIALQASVVINNIG 171


>09_04_0078 +
           14379720-14379786,14379903-14379974,14381093-14381497,
           14382835-14382911,14383016-14383135,14383227-14383997,
           14384933-14385146,14385269-14385735
          Length = 730

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 174 IIVGNVTKAILSNEYVFE*VQSVPGHXPARSLSTYPIVCNIG 49
           ++VG  T  + +  +V   + SVPG+   R +  Y + C  G
Sbjct: 77  VVVGANTTVLATRRWVGLEIDSVPGNEGQRDIVNYYLRCATG 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,836,037
Number of Sequences: 37544
Number of extensions: 135036
Number of successful extensions: 266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)