Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_B03
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    31   0.15 
AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical ...    26   5.5  
AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z37140-1|CAA85496.1|  161|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear recep...    26   7.3  
AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear horm...    26   7.3  
AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear horm...    26   7.3  

>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 308  CLRCPVNYPWLNDPTG 261
            CL CP  YPWL +P G
Sbjct: 1858 CLPCPTMYPWLENPAG 1873


>AF040646-6|AAK31540.1|  510|Caenorhabditis elegans Hypothetical
           protein H17B01.1b protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 288 LPLVKRPHGRWPLLRSHDLEPHVLY*LILIWCSSCSKY 175
           LP +     RWPL+ +  + P VL   +L+ C    KY
Sbjct: 210 LPHLLGTGDRWPLIFAFTVVPAVLQLALLMLCPESPKY 247


>AF040646-5|AAK31539.1|  492|Caenorhabditis elegans Hypothetical
           protein H17B01.1a protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 288 LPLVKRPHGRWPLLRSHDLEPHVLY*LILIWCSSCSKY 175
           LP +     RWPL+ +  + P VL   +L+ C    KY
Sbjct: 192 LPHLLGTGDRWPLIFAFTVVPAVLQLALLMLCPESPKY 229


>Z37140-1|CAA85496.1|  161|Caenorhabditis elegans Hypothetical
           protein ZK899.1 protein.
          Length = 161

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 303 EMPSQLPLVKRPHGRWPLLRSHDLEPH 223
           E P   PLV  PH    +L   DLE H
Sbjct: 87  EHPKHAPLVPTPHDPRAVLMEPDLEDH 113


>AF273806-1|AAG15155.1|  395|Caenorhabditis elegans nuclear receptor
           NHR-58 protein.
          Length = 395

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 100 TRYTLNLL-ENIFVR*NCFSYITYYYVFRAT--TTPNQYQLIEH 222
           T+  +N+   N+F R +C     YY++  AT  T  +++Q +EH
Sbjct: 160 TKMPVNMATNNVFSRGDCSDCWEYYFLTTATWLTNFDEFQKLEH 203


>AF022976-15|AAO26008.1|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform b protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 100 TRYTLNLL-ENIFVR*NCFSYITYYYVFRAT--TTPNQYQLIEH 222
           T+  +N+   N+F R +C     YY++  AT  T  +++Q +EH
Sbjct: 89  TKMPVNMATNNVFSRGDCSDCWEYYFLTTATWLTNFDEFQKLEH 132


>AF022976-14|AAC69077.1|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 58, isoform a protein.
          Length = 393

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 100 TRYTLNLL-ENIFVR*NCFSYITYYYVFRAT--TTPNQYQLIEH 222
           T+  +N+   N+F R +C     YY++  AT  T  +++Q +EH
Sbjct: 158 TKMPVNMATNNVFSRGDCSDCWEYYFLTTATWLTNFDEFQKLEH 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,895,963
Number of Sequences: 27780
Number of extensions: 121186
Number of successful extensions: 276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)