Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A24
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   4.8  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   4.8  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.4  

>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 582 FVTYLHYCSQKFITFHISSLKNIKMIETVCXQFL 683
           +V +L+    +++ FH   L  +K +  +C QFL
Sbjct: 272 WVPFLYSLQARYLAFHPVDLGLVKTLAILCLQFL 305


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 228 SVNATRGTHTYACVPLVEILE*LACSSLLHRVNSLSNVCNLTTILKNIXQ 377
           ++N  RG    AC  L   ++      L  R+NSL N C+L    K I +
Sbjct: 468 NMNKNRGKLALACKVLDVFVDCEPTIDLRRRLNSLVNACSLIQPFKLILE 517


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 522 EQHYCILVETLSSQCPILEDFVTYLHYCSQKFITFHISSLKN 647
           E+H  +LV  LS++ PIL  F   L   S +F   H  +L++
Sbjct: 452 ERHIRLLVSYLSNRFPILLHFPFLLKKNSAQFAYSHSRALES 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,580
Number of Sequences: 5004
Number of extensions: 53045
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)