Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A24
         (733 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025718-1|AAH25718.1|  663|Homo sapiens peptidyl arginine deimi...    30   7.4  
AL590644-3|CAH73167.1|  663|Homo sapiens peptidyl arginine deimi...    30   7.4  
AJ549502-5|CAE47743.1|  663|Homo sapiens peptidyl arginine deimi...    30   7.4  
AF285157-1|AAG13403.1|  526|Homo sapiens topoisomerase II alpha-...    30   7.4  
AB017919-1|BAA84542.1|  663|Homo sapiens peptidylarginine deimin...    30   7.4  

>BC025718-1|AAH25718.1|  663|Homo sapiens peptidyl arginine
           deiminase, type IV protein.
          Length = 663

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 519 LEQHYCILVETLSSQCPILEDFVTY 593
           LE+  C L+E L  QC  + DF TY
Sbjct: 612 LEEKVCSLLEPLGLQCTFINDFFTY 636


>AL590644-3|CAH73167.1|  663|Homo sapiens peptidyl arginine
           deiminase, type IV protein.
          Length = 663

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 519 LEQHYCILVETLSSQCPILEDFVTY 593
           LE+  C L+E L  QC  + DF TY
Sbjct: 612 LEEKVCSLLEPLGLQCTFINDFFTY 636


>AJ549502-5|CAE47743.1|  663|Homo sapiens peptidyl arginine
           deiminase, type IV protein.
          Length = 663

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 519 LEQHYCILVETLSSQCPILEDFVTY 593
           LE+  C L+E L  QC  + DF TY
Sbjct: 612 LEEKVCSLLEPLGLQCTFINDFFTY 636


>AF285157-1|AAG13403.1|  526|Homo sapiens topoisomerase II alpha-2
           protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 605 FSKIYNISHFFIKKH*DDRNSLXPVFINLIPNDIMYFS 718
           F     +S  FIK H   R  + P F N+IPN I  FS
Sbjct: 388 FGSTCQLSEKFIKAHLYSRFLIDPFFPNMIPNMIFSFS 425


>AB017919-1|BAA84542.1|  663|Homo sapiens peptidylarginine deiminase
           type V protein.
          Length = 663

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 519 LEQHYCILVETLSSQCPILEDFVTY 593
           LE+  C L+E L  QC  + DF TY
Sbjct: 612 LEEKVCSLLEPLGLQCTFINDFFTY 636


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,034,705
Number of Sequences: 237096
Number of extensions: 1731085
Number of successful extensions: 2404
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2404
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)