Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A23
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    27   1.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   1.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.8  

>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 468 VNAYTTIITEIFEFKYYGRQRLGSASDIADVYLRR 364
           + A TTII ++  +   G    G   D+ DV++RR
Sbjct: 62  LGAQTTIIADMDRYIVNGAHDAGKLQDLLDVFIRR 96


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 166 LFCKVSCCDCQ 134
           L+C VSCCDC+
Sbjct: 161 LYCSVSCCDCR 171


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 22  KSRYFILNTTQQVPSETRSLLRLLPTDSMHLHASNTIIDNHSS 150
           +S  ++L++   +  E RSLL+   T S +   ++ +  NHSS
Sbjct: 459 ESDLYLLDSVFDLVPEIRSLLQQFSTSSGNTRKTSLLGSNHSS 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,802,337
Number of Sequences: 5004
Number of extensions: 33251
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)