Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A23
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0380 + 22937941-22937984,22939375-22941481                       31   0.69 
08_02_1616 + 28260204-28262555                                         30   1.2  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    27   6.4  
05_07_0074 - 27509124-27509199,27509613-27512143                       27   8.5  

>11_06_0380 + 22937941-22937984,22939375-22941481
          Length = 716

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 127 YSTHVGAWSLWAANARANGSRSEPVVL 47
           +S   G W+LW AN R NG  S+P  L
Sbjct: 486 FSRFQGQWALWVAN-RVNGGDSDPAAL 511


>08_02_1616 + 28260204-28262555
          Length = 783

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 300 PRWSRTLASLL*NRVCXTVSVYFSFRLQAFVMTLLYPDSSSID 172
           P W   L + L + VC + S  F++ L A +     PD++ +D
Sbjct: 194 PEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMD 236


>04_04_1694 -
           35419278-35419565,35419744-35419861,35420404-35420490,
           35420909-35420931,35421647-35421843,35421964-35422159,
           35422382-35422481,35423288-35423374,35424053-35424282,
           35424678-35424763,35425148-35425271,35425415-35428573,
           35430014-35430019
          Length = 1566

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
 Frame = +1

Query: 25  SRYFILNTTQQVPSETRSLLR---LLPT 99
           S  ++LN ++ VPSE++S+L+   LLPT
Sbjct: 518 SSTYVLNDSRNVPSESKSMLKSSDLLPT 545


>05_07_0074 - 27509124-27509199,27509613-27512143
          Length = 868

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 413 GSGLALPLTLQTSIYDGN 360
           GSG A P+T+ + +YDGN
Sbjct: 470 GSGYASPVTIGSMLYDGN 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,532,431
Number of Sequences: 37544
Number of extensions: 218212
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)