Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A22
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...   139   5e-34
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    35   0.015
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   7.0  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   7.0  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score =  139 bits (336), Expect = 5e-34
 Identities = 78/186 (41%), Positives = 112/186 (60%), Gaps = 1/186 (0%)
 Frame = -1

Query: 719 FGEXAXMYNMPRAAXVRAQTAG-ALWAMDRHTFRRILLKSAFKKRKLYEELLDKVPMLKA 543
           FGE A MYN PRAA V ++T    ++A+DR +FRRI+ ++A+++R LYE LL++VP+L +
Sbjct: 222 FGELALMYNAPRAASVVSKTPNNVIYALDRTSFRRIVFENAYRQRMLYESLLEEVPILSS 281

Query: 542 LQPYERANLADALLPRTLVEGELIIRQGDTADGMYFVEDGSVSIRITRDDGNEHEIKRLG 363
           L  Y+R  +ADAL       G ++IRQGD  +  Y +EDG   + +    G    +  L 
Sbjct: 282 LDKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIEDGEAEV-VKNGKG---VVVTLT 337

Query: 362 KGDYFGELALVTHKPRAASVYAIGATKVAFLDVETFERLLGPCMEIMKRNIDXYEEQLVK 183
           KGDYFGELAL+    R A+V A    K+A  D  TF RLLG  +++M RN       +  
Sbjct: 338 KGDYFGELALIHETVRNATVQAKTRLKLATFDKPTFNRLLGNAIDLM-RNQPRARMGMDN 396

Query: 182 LFGDKS 165
            +GD+S
Sbjct: 397 EYGDQS 402



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
 Frame = -1

Query: 554 MLKALQPYERANLADALLPRTLVE-GELIIRQGDTADGMYFVEDGSVSI------RITRD 396
           + K L       + +A+  + + E G  +I QG   D  Y VE G   +       IT +
Sbjct: 143 LFKNLDEEHYNEVLNAMTEKRIGEAGVAVIVQGAVGDYFYIVEQGEFDVYKRPELNITPE 202

Query: 395 D----GNEHEIKRLGKGDYFGELALVTHKPRAASVYAIGATKVAF-LDVETFERLL 243
           +    G  + I  +  G+YFGELAL+ + PRAASV +     V + LD  +F R++
Sbjct: 203 EVLSSGYGNYITTISPGEYFGELALMYNAPRAASVVSKTPNNVIYALDRTSFRRIV 258


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
 Frame = -1

Query: 599  FKKRKLYEELLDKVPMLKALQPYERANLADALLPRT--------LVEGELIIRQGDTADG 444
            F  R   E ++D+ P++         +L  +LL +         L   +++  + D +D 
Sbjct: 617  FLPRSCLERIIDQEPLISLTIAKRLISLVPSLLLKLDFAVGWIHLNPDQVVYEKNDPSDC 676

Query: 443  MYFVEDGSV-SIRITRDDGNEHE--IKRLGKGDYFGELALVTHKPRAASVYAIGATKVAF 273
            +Y V +G + SI   R             GKGD  GEL ++ +  R+++++AI  +++A 
Sbjct: 677  VYVVLNGRLRSIEDERGSARTQVDYFNEYGKGDSVGELEMLLNNRRSSTLFAIRDSELAK 736

Query: 272  LDVETFERL 246
            +    F  L
Sbjct: 737  IPETLFNAL 745



 Score = 33.1 bits (72), Expect = 0.046
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 485 EGELIIRQGDTADGMYFVEDG 423
           +G  I+RQGD ADG+Y++ DG
Sbjct: 539 KGTTIVRQGDHADGLYYIIDG 559


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 1/130 (0%)
 Frame = +1

Query: 166 LLSPNNLTSCSSXSSM-LRFMISMHGPRRRSNVSTSKNATLVAPIA*TEAARGLWVTKAS 342
           LL P++++S    SS  +   IS         +++S  ++L +    T +++    + +S
Sbjct: 138 LLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSS---TSSSQPSVSSTSS 194

Query: 343 SPK*SPLPRRLISCSLPSSRVIRMLTEPSSTKYMPSAVSP*RMISSPSTRVRGSRASAKL 522
           S   S  P    S  L SS V+   + PSS+       S     S PST    S  S+ L
Sbjct: 195 STFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL 254

Query: 523 ARSYGCSAFS 552
           + S   S  S
Sbjct: 255 SSSSSSSTAS 264


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 617 ILLKSAFKKRKLYEELLDKVPMLKALQPYERANL 516
           +LL+     RK+ EEL +++  +K++ PY   +L
Sbjct: 3   LLLEGTSLARKVREELREQISSIKSVDPYFNVSL 36


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 35/120 (29%), Positives = 50/120 (41%)
 Frame = +1

Query: 172 SPNNLTSCSSXSSMLRFMISMHGPRRRSNVSTSKNATLVAPIA*TEAARGLWVTKASSPK 351
           S ++ +S SS SS      S       S+ S+S +++   PI  T +      + +SS  
Sbjct: 169 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI--TSSTSSSHSSSSSSSS 226

Query: 352 *SPLPRRLISCSLPSSRVIRMLTEPSSTKYMPSAVSP*RMISSPSTRVRGSRASAKLARS 531
            S       S S PSS    + T  SST      V+P    SS S+ V  S A+  L  S
Sbjct: 227 SSS------SSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALALNAS 280


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 24/83 (28%), Positives = 37/83 (44%)
 Frame = -1

Query: 491  LVEGELIIRQGDTADGMYFVEDGSVSIRITRDDGNEHEIKRLGKGDYFGELALVTHKPRA 312
            L +G+L+ R+GDT   +  +E G V      D   E   + +      GEL   +     
Sbjct: 841  LRKGDLLWRKGDTPSKLVILETGMVKASYQMD--RESLSENITCLCVVGELPFFSKTCYN 898

Query: 311  ASVYAIGATKVAFLDVETFERLL 243
            A+V A   + V  LD E +E +L
Sbjct: 899  ATVVAELDSAVWILDREGWETML 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,976
Number of Sequences: 5004
Number of extensions: 50939
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)