Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_A19
(377 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 32 0.026
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 28 0.56
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 0.74
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 0.74
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 1.3
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 3.0
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 3.9
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch... 25 5.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 24 6.9
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su... 24 6.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 24 6.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 6.9
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 6.9
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 24 9.1
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 32.3 bits (70), Expect = 0.026
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 98 FLNRFSIMLVFWWEDLSFCIGYPFFKIF 181
FL RFS+ W +L +GY FF IF
Sbjct: 1476 FLERFSMRYTHRWRNLGIFVGYVFFNIF 1503
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 27.9 bits (59), Expect = 0.56
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 13 PKLNYIIYKLVFTW-IPDFAFVSSSYPVLIFESLLYHVG 126
P L++ ++ +V IP+ +S +YP LIFE+L +G
Sbjct: 159 PTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLG 197
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 0.74
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 12/66 (18%)
Frame = +1
Query: 28 IIYKLVFTWIPDFAFVSSSYPVLIFESLLYHVGFLVGRFVFL------------YWLPIL 171
++ KL++ + + + VL+F S+L+ V +L +++ + YW P++
Sbjct: 579 VLNKLIYFFTIAICYACINPLVLLFASVLFCVNYLTQKYILMYVSNSSTESGGGYWRPVV 638
Query: 172 QNILVG 189
IL+G
Sbjct: 639 NRILLG 644
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 0.74
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 169 EWVTNTKRQIFPPENQHDREAIQKLIQDMRKKQM 68
+++ + ++FP Q D E I +L DMR++ +
Sbjct: 729 KYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL 762
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 124 QHDREAIQKLIQDMRKKQMQSLESK*TQVYK 32
Q E + +IQDM KKQ +S TQ ++
Sbjct: 960 QRTNEVLLPVIQDMHKKQFVGTQSNLTQFFE 990
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 3.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 234 WLCTHRFLLDCSFFSTNQNILKNG*PIQKDKSSHQKTNMIEKRF 103
WLCT L C+ S +I+ + KSS KTN++ F
Sbjct: 348 WLCTFFHALQCAIIS---SIVSQWFFYRDTKSSATKTNLVSHFF 388
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 3.9
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = -2
Query: 355 DVINCDKLANREK--SKYNNLISKNLKRNF*TMGNWKLEVGRMAMY---TSFPVGLFFF- 194
DV+N D + ++ S+ N ++ N R + WK +G+ A FP L
Sbjct: 266 DVLNRDAMYSKISRISRLPNYLTVNFVRFY-----WKASIGKKAKILRKVKFPFELDAVE 320
Query: 193 FNQPKYFEEW--VTNTKRQIFPPENQHDREAIQKLIQDMRKKQMQSLESK*TQVYK*YNL 20
F P+ ++ V + R+I + +H+R A + IQ ++ E + TQV +L
Sbjct: 321 FCTPELSQKLIPVRDKLREIEKNDEEHERAAKRIKIQPSEDEKEAEAECRLTQVATCQSL 380
Query: 19 V 17
V
Sbjct: 381 V 381
>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 311
Score = 24.6 bits (51), Expect = 5.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 122 LVFWW-EDLSFCIGYPFFKIFWLVEKKEQSNRKRCV 226
L FW E L Y FWL++KK+Q +++R V
Sbjct: 23 LDFWLKEHLHVSAIYWSCMSFWLLKKKDQIDKERIV 58
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Frame = +1
Query: 100 FESLLYHVGFLVGRFVFL--YWLPI 168
F+ + +V F+VG +FL YW+ I
Sbjct: 269 FDFICNYVSFMVGSIIFLVVYWIGI 293
>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 198 KNNPTGNDVYIAILPTSSFQLP 263
K NP+ NDV A L SF+ P
Sbjct: 54 KFNPSENDVLCASLKIKSFETP 75
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.2 bits (50), Expect = 6.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 226 YTSFPVGLFFFFNQPKYFEEWVTNTKRQIFPP 131
YT FPV + + NQP E T QI P
Sbjct: 422 YTLFPVPVDVYDNQPNNPESLAQTTLLQISTP 453
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 6.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 70 FVSSSYPVLIFESLLYHVGFLVGRFVFL 153
F+ SSY I +SLL GFL VFL
Sbjct: 526 FLDSSYYKPILDSLLGVFGFLADSKVFL 553
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 6.9
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +2
Query: 53 GFQTLHLFLPHILY*FLNRFSIMLVF 130
G +T ++ H+L+ LNR ++ L++
Sbjct: 546 GLETFFAYIVHLLHGVLNRNNVKLIY 571
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 9.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -1
Query: 224 HIVSCWIVLFFQP 186
H++SC+ LFF+P
Sbjct: 594 HVLSCYKTLFFEP 606
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,498
Number of Sequences: 5004
Number of extensions: 37114
Number of successful extensions: 124
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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