Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A17
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583...    28   5.7  
12_01_0266 + 1936357-1936665                                           28   5.7  

>12_01_0684 +
           5828947-5829012,5831123-5832103,5832200-5832326,
           5832623-5832705,5832752-5832917,5833337-5833399,
           5833624-5833733,5834227-5834276,5834528-5834664,
           5835180-5835281,5835871-5835988,5836575-5836627,
           5836710-5836813,5836910-5836972,5837375-5837503,
           5837508-5837605,5838446-5838500,5839260-5839311,
           5839996-5840113,5841906-5842035,5842156-5842437
          Length = 1028

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 492 IFISNLHHHYLEITGNHHTFNTKMT 418
           +++ ++H H L   GNHHT +   T
Sbjct: 117 LYMDSVHSHLLRFKGNHHTISPNGT 141


>12_01_0266 + 1936357-1936665
          Length = 102

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 184 G*AFVLTTQLMTNLTRLCYENDSSHEKGVKMAKRLD 291
           G  F+   +L   + RLC + D+ HE+  +M K  D
Sbjct: 47  GDGFISPLELQNVMRRLCLQRDAGHEECERMLKVFD 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,844
Number of Sequences: 37544
Number of extensions: 249528
Number of successful extensions: 399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)