Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A11
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    29   0.92 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   1.6  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    27   2.8  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   4.9  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   4.9  

>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 706 QNLEITLKNLEEAKAXKIHEIHDLEEKCEELK 611
           QNL  TLKN+E+A+  +   I D+++   E++
Sbjct: 117 QNLSATLKNIEQARPTEEITIEDMKQAVPEIE 148


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 685  KNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHL 581
            KN    +A     IH LEE  EE K ++++L + L
Sbjct: 1351 KNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRL 1385


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 655 IHEI-HDLEEKCEELKSQMSDLKAHL 581
           I EI +D EE+   L+SQ S LKAHL
Sbjct: 404 IEEIRNDYEERIHALESQNSALKAHL 429


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 485 LSYIGFTSNNYCYSKLCCFYTIRIYVS*FENWLTY 381
           L+ +G+  NN  +S L C +  + Y+  F +WL Y
Sbjct: 402 LATLGYLQNNV-FSFLNCLFEEKKYMKHFISWLNY 435


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -1

Query: 739 IPYLIGEIFICQNLEITLKNLEEAKAXKIHEIHDLEEKCEEL 614
           IP+L  E+     L   LK +   +  +  E++D+ +KC+ L
Sbjct: 301 IPFLNYELITSTKLAKVLKRIAFLEHLENDELYDIRQKCKNL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,631
Number of Sequences: 5004
Number of extensions: 42787
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)