Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A11
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693     40   0.003
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    33   0.24 
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    33   0.31 
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   6.8  
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206...    28   6.8  

>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
          Length = 126

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -1

Query: 739 IPYLIGEIFICQNLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHLYGKF 569
           + + IGE+F     +     LE+ K     ++  LE++ E + SQM++LK  LYGKF
Sbjct: 61  VRFQIGEVFAHMPRDDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELKKILYGKF 117


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 706 QNLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHL 581
           Q LE  LKNLE     K  ++  LE+  EEL+ ++S L+  L
Sbjct: 841 QQLEANLKNLESELEQKQSQVSALEQANEELREKISSLERQL 882



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 703 NLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHLYGK 572
           NL+  ++NLE AK    +E+   +EKC  L SQ+   KA L  K
Sbjct: 548 NLQEAVENLEAAKTNMYNEVTVHQEKCTFLSSQLE--KAQLAEK 589


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 703 NLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDL 593
           NL I LKN +EA    +  + +LEE  EE K+++S +
Sbjct: 412 NLSIQLKNTQEANIELVSILQELEETIEEQKAEISKI 448



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
 Frame = -1

Query: 727  IGEIFICQNLEITLKN-LEEAK--AXKIHEIH-DLEEKCEELKSQMSDL 593
            + +I   Q+  + LK+ L+EAK    K+ E+H  + E+CEELK+Q + L
Sbjct: 1115 VQKIMSLQDEVLKLKSSLDEAKFERGKLEELHRSVTEECEELKAQKAML 1163


>08_02_1453 -
           27199228-27200579,27200712-27202646,27202905-27202966,
           27203525-27203545,27204305-27204344,27204345-27204792,
           27204866-27204964,27205071-27205394,27205446-27205574,
           27205657-27205875,27205976-27206194,27206436-27206669,
           27206773-27206943,27207466-27207577,27207955-27208010,
           27208083-27208181,27208901-27209134,27209258-27209311,
           27209363-27209422
          Length = 1955

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 682 NLEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
           N E  +A  + +IHDL+E   E +SQM  L+
Sbjct: 173 NSEAERAQHLKQIHDLQEHLREKESQMLALE 203


>05_06_0116 -
           25719030-25719458,25720138-25720301,25720390-25720643,
           25720727-25720782,25721032-25721169,25721315-25721421,
           25721502-25721681,25721757-25721852,25721926-25722007,
           25722084-25722425,25722666-25722695,25722788-25722880,
           25722963-25723040,25723122-25723222,25723833-25724058,
           25724647-25724760,25724855-25725009,25725515-25725554
          Length = 894

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -1

Query: 706 QNLEITLKNLEEAKAXKIHEIHDL----EEKCEELKSQMSDLKAHLYGK 572
           Q +E+T K +EE    KI E+  L     +K EE+++  S LK+ L+ K
Sbjct: 329 QKIELTAKQMEEHLTTKIKEVESLLVQSNKKIEEVEA-ASLLKSQLWNK 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,650,174
Number of Sequences: 37544
Number of extensions: 203086
Number of successful extensions: 430
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)