Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_A11
(742 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41816-1|AAB17063.1| 130|Homo sapiens C-1 protein. 57 8e-08
BC010953-1|AAH10953.1| 134|Homo sapiens prefoldin subunit 4 pro... 57 8e-08
AL133335-1|CAI19316.1| 134|Homo sapiens prefoldin subunit 4 pro... 57 8e-08
U49356-1|AAA90924.1| 2285|Homo sapiens DNA polymerase epsilon ca... 37 0.066
S60080-1|AAA15448.1| 2257|Homo sapiens DNA polymerase epsilon ca... 37 0.066
L09561-1|AAC19148.1| 2286|Homo sapiens DNA polymerase epsilon, c... 37 0.066
AY273166-1|AAP12650.1| 2265|Homo sapiens polymerase (DNA directe... 37 0.066
AF127975-3|AAD44692.1| 2243|Homo sapiens DNA polymerase epsilon ... 37 0.066
AF127975-2|AAD44691.1| 2286|Homo sapiens DNA polymerase epsilon ... 37 0.066
AF127975-1|AAD44690.1| 2297|Homo sapiens DNA polymerase epsilon ... 37 0.066
AB209902-1|BAD93139.1| 983|Homo sapiens DNA polymerase epsilon ... 37 0.066
BC131515-1|AAI31516.1| 632|Homo sapiens GOLGA6 protein protein. 32 1.9
AF266285-1|AAF72535.1| 693|Homo sapiens golgin-like protein pro... 32 1.9
AF263742-1|AAF72196.1| 693|Homo sapiens golgin-like protein pro... 32 1.9
>U41816-1|AAB17063.1| 130|Homo sapiens C-1 protein.
Length = 130
Score = 56.8 bits (131), Expect = 8e-08
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -1
Query: 739 IPYLIGEIFICQNLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 560
IPY IG++FI + E T + LEEAK EI LE + E ++ ++DLK LY KFGS+
Sbjct: 63 IPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 122
>BC010953-1|AAH10953.1| 134|Homo sapiens prefoldin subunit 4
protein.
Length = 134
Score = 56.8 bits (131), Expect = 8e-08
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -1
Query: 739 IPYLIGEIFICQNLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 560
IPY IG++FI + E T + LEEAK EI LE + E ++ ++DLK LY KFGS+
Sbjct: 67 IPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 126
>AL133335-1|CAI19316.1| 134|Homo sapiens prefoldin subunit 4
protein.
Length = 134
Score = 56.8 bits (131), Expect = 8e-08
Identities = 28/60 (46%), Positives = 38/60 (63%)
Frame = -1
Query: 739 IPYLIGEIFICQNLEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 560
IPY IG++FI + E T + LEEAK EI LE + E ++ ++DLK LY KFGS+
Sbjct: 67 IPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSN 126
>U49356-1|AAA90924.1| 2285|Homo sapiens DNA polymerase epsilon
catalytic subunit protein.
Length = 2285
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 568 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 610
>S60080-1|AAA15448.1| 2257|Homo sapiens DNA polymerase epsilon
catalytic subunit protein.
Length = 2257
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 540 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 582
>L09561-1|AAC19148.1| 2286|Homo sapiens DNA polymerase epsilon,
catalytic polypeptide protein.
Length = 2286
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 569 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 611
>AY273166-1|AAP12650.1| 2265|Homo sapiens polymerase (DNA directed),
epsilon protein.
Length = 2265
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 548 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 590
>AF127975-3|AAD44692.1| 2243|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform c protein.
Length = 2243
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 526 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 568
>AF127975-2|AAD44691.1| 2286|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform b protein.
Length = 2286
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 569 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 611
>AF127975-1|AAD44690.1| 2297|Homo sapiens DNA polymerase epsilon
catalytic subunit protein isoform a protein.
Length = 2297
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 580 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 622
>AB209902-1|BAD93139.1| 983|Homo sapiens DNA polymerase epsilon
catalytic subunit variant protein.
Length = 983
Score = 37.1 bits (82), Expect = 0.066
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Frame = -1
Query: 715 FICQNLEITLKN-LEEAKAXKIHEIHDLEEKCEELKSQMSDLK 590
F+ Q +E TL++ LEE + + ++ + EE C+E+KS+++ LK
Sbjct: 377 FLLQRVEKTLRHALEEEEKVPVEQVTNFEEVCDEIKSKLASLK 419
>BC131515-1|AAI31516.1| 632|Homo sapiens GOLGA6 protein protein.
Length = 632
Score = 32.3 bits (70), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 700 LEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSD 596
+ + + L+E K IH I +LE ELK+QM++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAE 284
>AF266285-1|AAF72535.1| 693|Homo sapiens golgin-like protein
protein.
Length = 693
Score = 32.3 bits (70), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 700 LEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSD 596
+ + + L+E K IH I +LE ELK+QM++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAE 284
>AF263742-1|AAF72196.1| 693|Homo sapiens golgin-like protein
protein.
Length = 693
Score = 32.3 bits (70), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 700 LEITLKNLEEAKAXKIHEIHDLEEKCEELKSQMSD 596
+ + + L+E K IH I +LE ELK+QM++
Sbjct: 250 MSVEARTLKEEKKRDIHRIQELERSLSELKNQMAE 284
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,114,358
Number of Sequences: 237096
Number of extensions: 1312109
Number of successful extensions: 6445
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6439
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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