Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A10
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    50   4e-07
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    38   0.002
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    29   0.61 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    29   0.81 
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    27   2.5  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.7  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    26   7.6  

>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
 Frame = -1

Query: 680 HGDHSS-HNMGMSMTFHGGYXET-ILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRK 507
           HG +S+  +  M MTF+  Y    I+F  W++  + +F+ S  AI I+  L+E L+    
Sbjct: 3   HGGNSTMRHCSMKMTFNTDYDNLCIVFKSWHIGNLSQFLLSLLAIAILGYLFERLR---- 58

Query: 506 HXLWKTYAGLQYCAVAPPDKGVANICAADEPXIVQPIPHMLERNVPTMMSTAHAWQTILH 327
                ++  L+        +G A           Q    +L  +  ++ S        L+
Sbjct: 59  -----SFTSLKETEF---QRGYAG----------QQSEGLLTHHSKSLKSGRPFRLCALY 100

Query: 326 GVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGY 228
            VQ++ SY LMLV MTYN ++  A+ +G+A GY
Sbjct: 101 AVQLVFSYFLMLVAMTYNAYVILAIAIGAAFGY 133


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = -1

Query: 350 HAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLFG 216
           H  ++  + VQ +V+Y+ ML+ M YN ++   +  G+  GYFLFG
Sbjct: 205 HFLRSCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFG 249


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 40  WYKSFNSTSYNLSSYNMDFY 99
           WY  FN T   L S+NMD+Y
Sbjct: 237 WYVLFNITMLRLVSFNMDYY 256


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
 Frame = -1

Query: 461 APPDKGVANICAADEPXIVQPIPHMLER--NVPTMMSTAH-AWQTILHGVQV-LVSYMLM 294
           APP+ G  N  + +E  I++P      R   + T ++  H  W++  H  ++   S    
Sbjct: 31  APPNDGEQNETSMEEMEIIEPPSEDSSRFPLLRTKLAAIHEGWESACHSFEIRFASTFHR 90

Query: 293 LVF-MTYNTWLCAAVVLGSATGYF 225
           + F   Y   +   ++L S  GYF
Sbjct: 91  IPFQFLYLAVIATVIILASYYGYF 114


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
 Frame = -1

Query: 686 SGHGDHSSHNMG-----MSMTFHGGYXET-ILFSWWNVTEVGEFVGSFFAIFIIALLYEG 525
           SG G  SS N       MSM ++    ++  L   W++    +F GS   IF  A+  EG
Sbjct: 12  SGMGMGSSSNSSAATCRMSMLWNWYIHDSCFLAKSWHINTGNKFAGSIIGIFFFAVAIEG 71

Query: 524 LKYYRK 507
           L   ++
Sbjct: 72  LSLVQR 77



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -1

Query: 359 STAHA--WQTILHGVQVLVSYM----LMLVFMTYNTWLCAAVVLGSATGYFLF 219
           ST H   WQ ++        Y+    LML+ M++N +      +G+  G+FLF
Sbjct: 103 STVHVTVWQQLIRAAMYSSFYLSATILMLIVMSFNGYAILFGFVGAWIGFFLF 155


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +2

Query: 632 RETSWTCPYCGYCDHHGLKKCGHC 703
           R   W CP CG+ +      C  C
Sbjct: 343 RPGDWNCPMCGFSNFQRRTSCFRC 366


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 159 EHFSSVTMFSEVNNYRFAPTKE 224
           EH S    F  VN+YR  P +E
Sbjct: 388 EHISIAKSFGRVNDYRIVPDQE 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,176
Number of Sequences: 5004
Number of extensions: 70677
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)