Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_A10
(833 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0273 + 16292553-16293002 58 9e-09
08_02_0896 + 22355097-22355627 48 1e-05
05_04_0365 + 20659846-20660301 40 0.002
01_06_0859 + 32519587-32520039 36 0.030
01_06_0858 + 32516641-32517105 35 0.092
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 4.6
04_03_0802 - 19830614-19831275,19831426-19831507 29 4.6
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 29 4.6
>09_04_0273 + 16292553-16293002
Length = 149
Score = 58.0 bits (134), Expect = 9e-09
Identities = 45/144 (31%), Positives = 68/144 (47%)
Frame = -1
Query: 650 MSMTFHGGYXETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHXLWKTYAGLQY 471
M MTF+ G TILF W ++ S A+ + + Y+ L+ +R K AG +
Sbjct: 2 MHMTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRV--KLLAGAKP 59
Query: 470 CAVAPPDKGVANICAADEPXIVQPIPHMLERNVPTMMSTAHAWQTILHGVQVLVSYMLML 291
++ PP A+ AA P + +P P ++TA L GV + Y+LML
Sbjct: 60 ASIPPP----ASSDAARAPLL---LPSSAAGRWPARLATAG-----LFGVNSGLGYLLML 107
Query: 290 VFMTYNTWLCAAVVLGSATGYFLF 219
M++N + AVV+G A GY F
Sbjct: 108 AVMSFNGGVFVAVVVGLAAGYLAF 131
>08_02_0896 + 22355097-22355627
Length = 176
Score = 47.6 bits (108), Expect = 1e-05
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 8/152 (5%)
Frame = -1
Query: 650 MSMTFHGGYXETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYR-KHXLWKTYAGLQ 474
M M+F+ G TILF W + ++ S A+F+ A LY+ L+ R + + +
Sbjct: 2 MHMSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLRAGRRHRAGG 61
Query: 473 YCAVAPPDKGVANICAADEPXIVQPIPHML-------ERNVPTMMSTAHAWQTILHGVQV 315
A G A+D ++ L R + + A A L G+
Sbjct: 62 GGGAASSAAGPVVPAASDARALLSAAGGRLGLGLGLGRRWMKEPRAAASAAAAALFGLSA 121
Query: 314 LVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 219
V Y+LML M++N + AVV G A G+ F
Sbjct: 122 AVGYLLMLAVMSFNGGVFLAVVAGLAAGHLAF 153
>05_04_0365 + 20659846-20660301
Length = 151
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -1
Query: 353 AHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 219
A A +T +H V+V V+Y++ML M++N + A+V G A G+ F
Sbjct: 83 AAALRTAVHAVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAF 127
>01_06_0859 + 32519587-32520039
Length = 150
Score = 36.3 bits (80), Expect = 0.030
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 332 LHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 219
+H V+V ++Y+LML M++N + A V G A G+ F
Sbjct: 93 VHAVRVGLAYLLMLALMSFNVGVLLAAVAGHAAGFLAF 130
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 650 MSMTFHGGYXETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 522
M MTF+ G ILF+ W G + + A+F +A+L E L
Sbjct: 28 MHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFL 70
>01_06_0858 + 32516641-32517105
Length = 154
Score = 34.7 bits (76), Expect = 0.092
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 386 LERNVPTMMSTAHAWQTILHGVQVLVSYMLMLVFMTYNTWLCAAVVLGSATGYFLF 219
L R P A A +H V+V V+Y+LML M++N + V G A G+ F
Sbjct: 80 LARRAPAAGGLARA---AVHTVRVGVAYLLMLALMSFNGGVFLVAVAGHAAGFLAF 132
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 644 MTFHGGYXETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 522
MTF G +LF+ W T G + + +F +A++ E L
Sbjct: 28 MTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFL 68
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Frame = +2
Query: 638 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCXAQ 730
+SW CP C C D + L C CD +Y C Q
Sbjct: 183 SSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQ 220
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 29.1 bits (62), Expect = 4.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 324 PMKYRLPCVCCAHHRR 371
P+ Y +PC CC H RR
Sbjct: 137 PVPYPVPCKCCPHRRR 152
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 383 QAYEELAVQXVVHLLHKYWQLPCLVVLRHNTVVLHMSS 496
QA+++ ++ + + H+ Q PC VVL +V H SS
Sbjct: 463 QAFQQREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSS 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,129,785
Number of Sequences: 37544
Number of extensions: 440736
Number of successful extensions: 973
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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