Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A10
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    25   0.86 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              24   2.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.0  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 416 PXIVQPIPHMLERNVPTMMST 354
           P  V  +PH L  N+PTM ST
Sbjct: 4   PYHVAQLPHHLSPNMPTMDST 24


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = +2

Query: 641 SWTCPYCGYCDH--HGLKKC 694
           ++TCP CG C    H +K C
Sbjct: 72  AYTCPICGACGDIAHTVKYC 91


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 16  IHFFISITWYKSFNSTSYNLSSYNMDFYI 102
           I  +I  T Y S N   YN   Y +D+++
Sbjct: 197 IETYIVNTNYSSKNMREYNDPEYKLDYFM 225


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 114 RNXVFTTNTNHHYNCEH-FSSVTMFSEVNNYRFAPTKEEV 230
           RN  F     HH+ C +  +SVT +++ N  +F  T++ +
Sbjct: 422 RNPWFVEFWEHHFQCRYPNASVTPYNK-NYTKFCSTEKRL 460


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 196 TTTDSRQPKRKYPVADPNTTAAHSHV 273
           ++T S  PK +Y   + N   +H H+
Sbjct: 104 SSTSSNDPKNQYKNQNNNHYTSHQHL 129


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = -1

Query: 500 LWKTYAGLQYCAVAPPDKGVANI 432
           +W  Y G+ Y  + PP++ + ++
Sbjct: 192 VWWDYKGIVYFELLPPNRTINSV 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,810
Number of Sequences: 438
Number of extensions: 5367
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)