Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A09
         (478 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   2.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.0  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   9.0  

>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 150 TGICPCICRLAXRDVEIGDIVTIGECR 70
           + IC C+  L   +++IG    I  CR
Sbjct: 8   SAICVCVGALTLEELQIGLRAVIPVCR 34


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 407 RFPEQERWHEEEGHAS 360
           R P +  WH  E H S
Sbjct: 149 RTPTEASWHSPEAHIS 164


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -1

Query: 172 YNRFEKRHRNMSVHLSPCXQGRGDW*YCNDRRMQTFVQNS 53
           YNR+  R R + +  + C   R    +  +RRM+   +N+
Sbjct: 29  YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENA 68


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -2

Query: 150 TGICPCICRLAXRDVEIGDIVTIGECR 70
           + IC C+  L   + +IG    +  CR
Sbjct: 8   SAICVCVGALTLEEFQIGLRAVVPICR 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,969
Number of Sequences: 438
Number of extensions: 2452
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)