Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A08
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    26   5.0  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    26   6.6  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    26   6.6  
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos...    26   6.6  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    25   8.7  

>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 507 IEDQVDSNKKVLRYPTDKTE*KQITRIVFEKRLYYLLR 620
           +E+++++N K+LR  T+K     +    FE+R+  L R
Sbjct: 91  LEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLER 128


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 574  KLPESYSRKDFTTYLGTFKIY 636
            ++PESY R  F+TYL +  +Y
Sbjct: 1061 RIPESYLRAIFSTYLASRFVY 1081


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 476 EYTLLHEIDVSICPEIVVRFITQ 408
           E TL++E+D   CP +  +FI+Q
Sbjct: 220 EVTLVNEVDDEPCPSLDFQFISQ 242


>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 626 KVPK*VVKSFLEYDSGNLFLFCLICRI-TQDFFIAVNLV 513
           KVP+ V+ SF+  ++G   L+C+   I ++ FF+ + ++
Sbjct: 175 KVPRVVISSFVVEENGVEKLYCIGSSIYSKSFFVLIPVI 213


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +1

Query: 346 KIFKNNVYNIDYHFVFVAN*SCVMKRTTISGHIETSISCSKVY--SRYDD-HGLR*PLKT 516
           +  +NN +   YH  ++ + +   K   +SG IE+SI     Y  S Y+    L     T
Sbjct: 114 QFLENNSWKSYYHNAWMQSENTKSKGNNVSGGIESSIQNLDPYAQSLYETAKQLLQNADT 173

Query: 517 RLTAIKKSCV 546
            L+ ++K+CV
Sbjct: 174 DLSKLEKTCV 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,419
Number of Sequences: 5004
Number of extensions: 54434
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)