Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A08
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-4|CAE17763.1|  191|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.1  
AF062007-1|AAC17500.1|  197|Caenorhabditis elegans unknown protein.    28   8.1  

>Z81484-4|CAE17763.1|  191|Caenorhabditis elegans Hypothetical
           protein C47A10.12 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = +1

Query: 400 N*SCVMKRTTISGHIETSISCSKVYSRYDDHGLR*PLKTR---LTAIKKSCVIRQIRQNK 570
           N SC+ +  T+   I   I C   Y+R    G+    KT    +  IKK CV +      
Sbjct: 104 NHSCIAQPETL---INFQIKCENPYARDIKKGVWLEGKTENCGVWDIKKYCVNKTALCGI 160

Query: 571 NKLPESYSRKDFTTYLGTFKIYC 639
           N   + Y RKD  T +    I C
Sbjct: 161 NTAVKPYKRKDIPTGVVDVNIKC 183


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 550 RQIRQNKNKLPES-YSRKDFTTYLGTFKI 633
           R+ RQ  N +P S YS  D+ TY GT  I
Sbjct: 153 RKQRQELNNVPSSSYSNNDYGTYAGTQSI 181


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 550 RQIRQNKNKLPES-YSRKDFTTYLGTFKI 633
           R+ RQ  N +P S YS  D+ TY GT  I
Sbjct: 153 RKQRQELNNVPSSSYSNNDYGTYAGTQSI 181


>AF062007-1|AAC17500.1|  197|Caenorhabditis elegans unknown protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 550 RQIRQNKNKLPES-YSRKDFTTYLGTFKI 633
           R+ RQ  N +P S YS  D+ TY GT  I
Sbjct: 138 RKQRQELNNVPSSSYSNNDYGTYAGTQSI 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,980
Number of Sequences: 27780
Number of extensions: 294002
Number of successful extensions: 583
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)