Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A07
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 464 DLFSQIQQCQQWHRPVQV 517
           DL  QIQQC ++  PV V
Sbjct: 71  DLMYQIQQCGKFKEPVAV 88


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 142 NHYLWIIH 119
           NHYLW+ H
Sbjct: 109 NHYLWLYH 116


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = -3

Query: 587 RVPEAIHEAKTGGWVSWAPTWMTGPGLAGATVGIVGF 477
           +VP  +       W  + P      G+ G  +G++GF
Sbjct: 28  KVPPDMLHLIDANWYQYPPLNPMWHGILGFVIGMLGF 64


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 604 SWLHHVEFLKLYMKPKPVV 548
           SW H+V  + LY   +P++
Sbjct: 162 SWTHNVLDMVLYWDQEPII 180


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/56 (17%), Positives = 22/56 (39%)
 Frame = +1

Query: 481 PTMPTVAPASPGPVIQVGAHETQPPVLASCIASGTRRDVAKSRARVNSAVASVKTS 648
           P   +     PG + Q+G+    PP  ++ + +        +     +A A+  T+
Sbjct: 73  PAFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTT 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,776
Number of Sequences: 438
Number of extensions: 4505
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)