Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A03
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    28   1.1  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    27   2.0  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   4.6  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   8.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   8.0  

>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 123 RHLNIRPTTWNHVTAAVTEVHRHYQFQ 203
           + LN RP TW H+   + E    YQ Q
Sbjct: 364 KSLNYRPGTWQHIEPNIIESIASYQLQ 390


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 425 FFNILDSLKVNYIPTVGTAPLATNVGNRSNSI 330
           FFN L     +Y+P +  A  A N  NRS+ +
Sbjct: 396 FFNSLQQSNQHYVPIIDAAIYAANPINRSDDV 427


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 277 LSVSFLTFTISQKLTQI 327
           +SVSFLTFT+  KLT +
Sbjct: 495 VSVSFLTFTVYAKLTNL 511


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +3

Query: 489 LFMYRF----KWECLIFGIPSYEAVFHMTLNLCFMKHK 590
           +F+Y F    +W  +I+ IP + A   +  +LCF   K
Sbjct: 292 IFVYSFLGHKEWRFIIYSIPWFNAASAIGASLCFNASK 329


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 599 YIYSFYCXVLLSNSNTFLITSTLNDAPNIDL 691
           Y+YSF+   +   SNTF   S L  + N+DL
Sbjct: 170 YVYSFHLEYVPLESNTF-SASALEYSKNLDL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,249
Number of Sequences: 5004
Number of extensions: 56752
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)