Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_A03
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC006790-4|AAF60732.1|  193|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 200 ELVMSMNFGDCGRDVVPCGRPYV 132
           E+  + N G C  +VV CGRPYV
Sbjct: 132 EIEEAYNAGKCHCEVVICGRPYV 154


>Z50872-1|CAA90754.2| 1052|Caenorhabditis elegans Hypothetical
           protein C05D12.2 protein.
          Length = 1052

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 554 EYCFIGRDAKYQALPFESIHKKITVRFIPN---SLRNQDELCAKCNFFNILDSLKVNYIP 384
           E+  I  D++   + F S +  I V   PN   SL+  D L       +I+ + K+N +P
Sbjct: 578 EFTLIVHDSEESHVLFSSYNPDIFVEKFPNLVNSLKLTDNLDNTMGLLSIIHAQKMNILP 637

Query: 383 T 381
           T
Sbjct: 638 T 638


>AC006790-4|AAF60732.1|  193|Caenorhabditis elegans Hypothetical
           protein Y49F6B.5 protein.
          Length = 193

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 494 KKITVRFIPNSLRNQDELCAKCNFFNILDS 405
           KK  ++F+P  +R   +LC+ C+    LDS
Sbjct: 34  KKEVLKFLPIRIRQHLQLCSNCSNLKRLDS 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,737
Number of Sequences: 27780
Number of extensions: 316572
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)