Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P24
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617...    97   1e-20
01_01_0700 - 5413026-5413122,5413226-5413356,5413840-5413905,541...    95   3e-20
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493...    29   3.2  
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647...    27   9.8  
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196...    27   9.8  

>10_08_0918 -
           21560635-21560795,21560847-21560935,21561696-21561760,
           21561841-21561892,21562271-21562356,21562457-21562626,
           21562748-21562831,21563284-21563354,21563461-21563621
          Length = 312

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 52/106 (49%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
 Frame = +2

Query: 197 QSVINTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDHLVHHCPTWQWAKGEEA 376
           Q V    KGT   V G  T     S F E GVL+  EF+ AGD+LV  CPTW W  G+ +
Sbjct: 5   QKVYELYKGTVERVTGPRTV----SAFLEKGVLSVPEFILAGDNLVSKCPTWSWEAGDPS 60

Query: 377 KIRPYLPADKQFLITRNVPCYRRCKQIEYCED---KEKVIEDENDA 505
           K +PYLP DKQFL+TRNVPC RR   +E   D    E V+ D+ DA
Sbjct: 61  KRKPYLPPDKQFLVTRNVPCVRRAVSLEEEYDAAGAEVVLGDDEDA 106


>01_01_0700 -
           5413026-5413122,5413226-5413356,5413840-5413905,
           5413986-5414037,5414496-5414581,5414682-5414851,
           5414974-5415057,5415302-5415372,5415461-5415621
          Length = 305

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 51/106 (48%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
 Frame = +2

Query: 197 QSVINTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDHLVHHCPTWQWAKGEEA 376
           Q V    KGT   V G  T     S F + GVL+  EF+ AGD+LV  CPTW W  G+ +
Sbjct: 5   QKVYELYKGTVERVTGPRTV----SAFLDKGVLSVPEFILAGDNLVSKCPTWSWEAGDPS 60

Query: 377 KIRPYLPADKQFLITRNVPCYRRCKQIEYCED---KEKVIEDENDA 505
           K +PYLP DKQFL+TRNVPC RR   +E   D    E V+ D+ DA
Sbjct: 61  KRKPYLPPDKQFLVTRNVPCLRRAVSLEEEYDAAGAEVVLGDDEDA 106


>05_05_0070 +
           22148595-22148907,22148988-22149104,22149196-22149350,
           22149987-22150061,22150179-22150469,22150942-22151292,
           22151390-22151794
          Length = 568

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +2

Query: 188 ITMQSVINTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDHLVHHCPTWQ-WAK 364
           + + + I  +  T  G    L P+L E K      +  +  +   DH+V   PTWQ +  
Sbjct: 133 LAISNAITNLCATIFGQLWRLEPLLPEKKTMWRREM--DWLLCVSDHIVELVPTWQTFPD 190

Query: 365 GEEAKIRPYLPADKQFLITRNVPCYRR 445
           G + +I    P    ++   N+P  R+
Sbjct: 191 GSKLEIMTSRPRSDLYI---NLPALRK 214


>06_01_0850 -
           6472213-6473541,6474229-6474282,6474616-6474671,
           6474824-6476012
          Length = 875

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 391 VRPNLSFLSLCPLPGRAVVHQVVTSSHKLFRSQYTSFLKFRFLQHRCQVTGHAKSSSLY 215
           V+PNL+FL  C +  R V       S +LF S   + +K R    R +  G  + S ++
Sbjct: 667 VKPNLAFLKQCGIDARDVASNPNLYSSRLFTS---NPMKLRDAVARVEELGMVRGSRVF 722


>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
            32520145-32520384,32521033-32521149,32521213-32521606,
            32521752-32521998,32522086-32522315,32522768-32522823,
            32522903-32523094,32523274-32523376,32523478-32523544,
            32524312-32525154,32525547-32525670,32525965-32526213,
            32526354-32526443,32526530-32526649,32526664-32526738,
            32527001-32527147,32527255-32527365,32527446-32527667,
            32527777-32527896,32527971-32528270,32528355-32528480,
            32529246-32529360,32529556-32530019,32530119-32530253,
            32530684-32530788,32530876-32531053,32531143-32531864
          Length = 2188

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 304  RVCGCW*PPGAPLPYLAVG 360
            R  GC+ P GAPL YL+ G
Sbjct: 2023 RCKGCYAPQGAPLSYLSAG 2041


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,941
Number of Sequences: 37544
Number of extensions: 309920
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)