Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P24
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)               94   1e-19
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_13047| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=7)              28   5.7  
SB_303| Best HMM Match : SURF6 (HMM E-Value=5)                         28   5.7  
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      28   7.6  

>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/79 (53%), Positives = 59/79 (74%), Gaps = 4/79 (5%)
 Frame = +2

Query: 365 GEEAKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHH-YDN 541
           GEE++++PYLP DKQ+L TRNVPCY+RCKQ+E+ E+ E ++E   D DGGWVDTHH  D 
Sbjct: 2   GEESRVKPYLPKDKQYLYTRNVPCYKRCKQMEHQEENEAIVEP--DEDGGWVDTHHKVDP 59

Query: 542 AG---SPALEEKVCEMTLE 589
           +G   +  ++E+  EM L+
Sbjct: 60  SGEKVTAGVQEQFSEMKLD 78


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 467 EDKEKVIEDENDADGGWVDTHHYDNAG 547
           +D + +  D +DADGG VD    DN G
Sbjct: 9   DDNDGINGDSHDADGGGVDGSDDDNVG 35


>SB_13047| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=7)
          Length = 271

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 467 EDKEKVIEDENDADGGWVDTHHYDNAG 547
           +D + +  D +DADGG VD    DN G
Sbjct: 9   DDNDGINGDSHDADGGGVDGSDDDNVG 35


>SB_303| Best HMM Match : SURF6 (HMM E-Value=5)
          Length = 353

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 455 IEYCEDKEKVIEDENDADGGWVDTHHYDNAGSP 553
           +   ED+ + I   + ++GGW    HY+  GSP
Sbjct: 100 VSLIEDRNRKIRIADSSEGGWATVKHYE--GSP 130


>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 455 IEYCEDKEKVIEDENDADGGWVDTHHYDNAGSP 553
           +   ED+ + I   + ++GGW    HY+  GSP
Sbjct: 146 VSLIEDRNRKIRIADSSEGGWATVKHYE--GSP 176


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 338  GAPGGHQQPQTLQESVHQFLE-ISIPSTP 255
            GA G H +P T+  ++ Q L  + +P+TP
Sbjct: 1812 GAQGNHMRPSTIPPALQQLLHTLKMPNTP 1840


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,875,232
Number of Sequences: 59808
Number of extensions: 358690
Number of successful extensions: 1025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)