Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P24
         (652 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119557-1|AAM50211.1|  330|Drosophila melanogaster GH28859p pro...   219   2e-57
AE014296-3054|AAF49233.1|  330|Drosophila melanogaster CG6877-PA...   219   2e-57
X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase...    28   9.6  
AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p pro...    28   9.6  
AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA p...    28   9.6  

>AY119557-1|AAM50211.1|  330|Drosophila melanogaster GH28859p
           protein.
          Length = 330

 Score =  219 bits (536), Expect = 2e-57
 Identities = 97/132 (73%), Positives = 115/132 (87%)
 Frame = +2

Query: 194 MQSVINTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDHLVHHCPTWQWAKGEE 373
           MQSV+NTVKGTAL VA YLTPVLKESKF+ETGVLTPEEFVAAGDHLVHHCPTWQWA G+E
Sbjct: 1   MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDE 60

Query: 374 AKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHHYDNAGSP 553
            K +PYLP DKQFLITRNVPCYRRCKQ+EY   +E ++E+E+  DGGWV+TH  ++ G+ 
Sbjct: 61  TKTKPYLPKDKQFLITRNVPCYRRCKQMEYV-GEETLVEEES-GDGGWVETHQLNDDGTT 118

Query: 554 ALEEKVCEMTLE 589
            LE+K+CE+T+E
Sbjct: 119 QLEDKICELTME 130


>AE014296-3054|AAF49233.1|  330|Drosophila melanogaster CG6877-PA
           protein.
          Length = 330

 Score =  219 bits (536), Expect = 2e-57
 Identities = 97/132 (73%), Positives = 115/132 (87%)
 Frame = +2

Query: 194 MQSVINTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDHLVHHCPTWQWAKGEE 373
           MQSV+NTVKGTAL VA YLTPVLKESKF+ETGVLTPEEFVAAGDHLVHHCPTWQWA G+E
Sbjct: 1   MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDE 60

Query: 374 AKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHHYDNAGSP 553
            K +PYLP DKQFLITRNVPCYRRCKQ+EY   +E ++E+E+  DGGWV+TH  ++ G+ 
Sbjct: 61  TKTKPYLPKDKQFLITRNVPCYRRCKQMEYV-GEETLVEEES-GDGGWVETHQLNDDGTT 118

Query: 554 ALEEKVCEMTLE 589
            LE+K+CE+T+E
Sbjct: 119 QLEDKICELTME 130


>X17298-1|CAA35185.1| 1129|Drosophila melanogaster RNA polymerase 3,
           second  largestsubunit protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 INTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDH 328
           +N V+ T + +     P++  SK    G  TPEE V  G+H
Sbjct: 121 VNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEH 161


>AY075569-1|AAL68376.1| 1129|Drosophila melanogaster SD02110p
           protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 INTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDH 328
           +N V+ T + +     P++  SK    G  TPEE V  G+H
Sbjct: 121 VNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEH 161


>AE014134-97|AAF51503.1| 1129|Drosophila melanogaster CG4033-PA
           protein.
          Length = 1129

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 INTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDH 328
           +N V+ T + +     P++  SK    G  TPEE V  G+H
Sbjct: 121 VNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGEH 161


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,996,974
Number of Sequences: 53049
Number of extensions: 527896
Number of successful extensions: 1693
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)