Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P24
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical ...   169   1e-42
U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna synt...    29   3.8  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    28   6.6  
Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    27   8.7  
AF078786-4|AAC26944.4|  714|Caenorhabditis elegans Sodium:neurot...    27   8.7  

>AC024826-7|AAF60797.1|  305|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.4 protein.
          Length = 305

 Score =  169 bits (411), Expect = 1e-42
 Identities = 75/121 (61%), Positives = 95/121 (78%), Gaps = 6/121 (4%)
 Frame = +2

Query: 194 MQSVINTVKGTALGVAGYLTPVLKESKFQETGVLTPEEFVAAGDHLVHHCPTWQWA-KGE 370
           MQ+++N +K  AL +    TPVL+ESKF+ETGVLTPEE+VAAGDHLVHHCPTW+WA   +
Sbjct: 1   MQNLVNNLKSAALQIGETFTPVLRESKFRETGVLTPEEYVAAGDHLVHHCPTWKWAGASD 60

Query: 371 EAKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDEN-----DADGGWVDTHHY 535
            +KIR +LP DKQFLITRNVPC++RCKQ+EY E  EK+I +E+       + GWVDTHHY
Sbjct: 61  PSKIRTFLPIDKQFLITRNVPCHKRCKQMEYDEKLEKIINEEDGEYQTSDETGWVDTHHY 120

Query: 536 D 538
           +
Sbjct: 121 E 121


>U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna
           synthetase protein 1 protein.
          Length = 918

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 290 VLTPEEFVAAGDHLVHHCPTWQWAKGEEAKIRPYLPADKQFLITRNVPCYRRCK 451
           +L  E+ +  G  LVH CPT       +   R  +P+D    ++ +    RR K
Sbjct: 122 ILEQEDLITRGKRLVHWCPTLSSTLSSQEVNRIDVPSDGYINLSSSSGTRRRVK 175


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 445 SSVAWHVSSYKELFVCRKVRPNLSFLSLC-PLPGRAVVHQVVTSSHKLFRSQ 293
           S+V   ++SY + FV  +  P L+FL+LC  L    +++    S + +F S+
Sbjct: 302 SNVISPLASYLQFFVKIRSLPILAFLTLCSSLTTAVIIYLAALSPNWIFNSE 353


>Z78415-7|CAH60759.1|  844|Caenorhabditis elegans Hypothetical
           protein C17G1.4b protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 344 GSGAPGGHQQPQTLQESVHQFL 279
           GS AP  HQ+P   Q+S+H  L
Sbjct: 381 GSNAPLSHQKPSQQQQSMHNHL 402


>Z78415-5|CAB01670.1|  925|Caenorhabditis elegans Hypothetical
           protein C17G1.4a protein.
          Length = 925

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 344 GSGAPGGHQQPQTLQESVHQFL 279
           GS AP  HQ+P   Q+S+H  L
Sbjct: 381 GSNAPLSHQKPSQQQQSMHNHL 402


>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 359 AKGEEAKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHHY 535
           A G    +  Y P  KQ  +   +P Y R   IEY  ++   + DEN   G W +   Y
Sbjct: 17  ASGNNVDMSLYPPFIKQ--LDAKLPDYTREGDIEYPFEEITGVGDENRIRGNWSNKSDY 73


>AF078786-4|AAC26944.4|  714|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 6
           protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 359 AKGEEAKIRPYLPADKQFLITRNVPCYRRCKQIEYCEDKEKVIEDENDADGGWVDTHHY 535
           A G    +  Y P  KQ  +   +P Y R   IEY  ++   + DEN   G W +   Y
Sbjct: 17  ASGNNVDMSLYPPFIKQ--LDAKLPDYTREGDIEYPFEEITGVGDENRIRGNWSNKSDY 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,175
Number of Sequences: 27780
Number of extensions: 262997
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)