Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P21
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...   129   2e-32
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.9  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    23   3.4  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score =  129 bits (312), Expect = 2e-32
 Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 13/220 (5%)
 Frame = +3

Query: 117 EVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDII 296
           E+E   T N   D      +F+  G+   L E  ++  + KP+ IQK AIPV L G+D++
Sbjct: 143 EIEVKVTGN---DAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLM 199

Query: 297 GLAETGSGKTGAFALPILQALL--ENP-------QRYFALILTPTRELAFQISEQFEALG 449
             A+TGSGKT AF LPI+  LL  +NP        +   +I++PTRELA QI++Q +   
Sbjct: 200 SCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFA 259

Query: 450 ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEA 629
            +  VK AVI GG     Q   +    HI++ATPGRL D + N    +   LKY V+DEA
Sbjct: 260 YNSTVKVAVIYGGTSTNHQRGRILGGCHILVATPGRLKDFV-NRGNVSFNSLKYFVLDEA 318

Query: 630 DRILNMDFEVEVDKIL--RAIPR--ERHTYLFSATMTXKV 737
           DR+L+M F  +V+++L  +++P   ER T +FSAT   +V
Sbjct: 319 DRMLDMGFLGDVEEMLSHQSMPATGERQTLMFSATFPEEV 358


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/60 (20%), Positives = 24/60 (40%)
 Frame = +2

Query: 398 SNKGTGISDIRTI*STWCKHRCKMCSNSWWYGHGGTSSNAIQETSHNHRHSRKIG*PPGE 577
           +N+G G     +    W  ++    +N W   +G  S+N  ++ + N   +       GE
Sbjct: 348 ANRGNGFPKRSSDEQQWRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGE 407


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 558 LVDHLENTKGFNLRPLKYL--VMDEADRI 638
           ++D++EN     L+ +KYL  V+ EA R+
Sbjct: 29  VIDNIENITMQQLQEMKYLEMVLKEAQRL 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,163
Number of Sequences: 336
Number of extensions: 4281
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)