Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_P21
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 284 8e-78
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 179 3e-46
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 165 8e-42
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 153 3e-38
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 143 3e-35
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 141 1e-34
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 136 2e-33
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 132 4e-32
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 130 2e-31
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 126 3e-30
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 125 6e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 124 1e-29
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 118 7e-28
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 115 8e-27
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 111 8e-26
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 110 2e-25
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 103 2e-23
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 97 3e-21
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 96 4e-21
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 96 4e-21
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 95 7e-21
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 95 7e-21
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 89 8e-19
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 39 6e-04
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 32 0.074
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.098
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 30 0.40
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 29 0.52
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 29 0.52
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 28 1.6
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 2.8
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 27 3.7
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 27 3.7
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 4.9
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 26 6.4
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 6.4
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 6.4
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2... 26 6.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.5
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 284 bits (697), Expect = 8e-78
Identities = 138/225 (61%), Positives = 174/225 (77%)
Frame = +3
Query: 63 RKCLQXRKAMESATNQXSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKP 242
+K K +E++ N SE +++ E K TFK+LGV+D LCEACE+L +K P
Sbjct: 12 KKNSSLNKKIETS-NSSSEKSSENNNGDSQNNEAPK-TFKELGVIDELCEACEKLGFKTP 69
Query: 243 SKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ 422
+ IQ+EAIPV L +D+IGLA+TGSGKT AFALP++Q L NP +FA++L PTRELA+Q
Sbjct: 70 TPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQ 129
Query: 423 ISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRP 602
ISEQFEA+G SIGV+ VIVGGMDMV QA+ LSKKPH+++ TPGRL+DHLENTKGF+L+
Sbjct: 130 ISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKN 189
Query: 603 LKYLVMDEADRILNMDFEVEVDKILRAIPRERHTYLFSATMTXKV 737
LKYL+MDEADR+L+MDF +DKIL+ IP ER T LFSATMT KV
Sbjct: 190 LKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKV 234
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 179 bits (436), Expect = 3e-46
Identities = 94/199 (47%), Positives = 134/199 (67%), Gaps = 5/199 (2%)
Frame = +3
Query: 156 TEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAF 335
+E + +F DLG+ L + + L +P+ IQ+ I L G++ IG A+TGSGKT AF
Sbjct: 2 SEHTRKSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAF 61
Query: 336 ALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALM 515
ALPI++ ++P FALILTPTRELA QI EQF ALGA++ +K A+IVGGMDM+ Q++
Sbjct: 62 ALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSID 121
Query: 516 LSKKPHIIIATPGRLVDHLENTKG---FNLRPLKYLVMDEADRILNMDFEVEVDKILRAI 686
LSK+PH+++ATPGRL D + + LR +K+LVMDEADR+L+ F ++D +
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVL 181
Query: 687 P--RERHTYLFSATMTXKV 737
P +R T LF+AT+T +
Sbjct: 182 PASEDRQTLLFTATVTDAI 200
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 165 bits (400), Expect = 8e-42
Identities = 82/191 (42%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +3
Query: 174 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ 353
+F+ + + + + L ++ P++IQ + IP+ALLGKDI+G A TGSGKT AF +PIL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 354 ALLENPQRY---FALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSK 524
LL P++ LIL PTRELA Q + + + + +GG+ + Q L K
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRK 379
Query: 525 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPRERHT 704
+P I+IATPGR +DH+ N++GF + ++ +VMDEADR+L F E+++I++A P+ R T
Sbjct: 380 RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQT 439
Query: 705 YLFSATMTXKV 737
LFSATMT KV
Sbjct: 440 MLFSATMTDKV 450
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 153 bits (370), Expect = 3e-38
Identities = 89/216 (41%), Positives = 138/216 (63%), Gaps = 5/216 (2%)
Frame = +3
Query: 105 NQXSEVEQTPTENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG 284
N+ V+++ N + ++ +K F DL + + + +A +E+ ++ ++IQK +IP L G
Sbjct: 69 NEDERVQKSVNLNASSTSDIEK--FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 285 KDIIGLAETGSGKTGAFALP---ILQALLENPQRYFA-LILTPTRELAFQISEQFEALGA 452
+D++G A+TGSGKT AF +P +L AL P+ +I++PTRELA QI + L
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLK 186
Query: 453 SIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEAD 632
+++GG + A+A L K ++++ATPGRL+DHL+NTKGF R L+ LV+DEAD
Sbjct: 187 YHHQTFGIVIGGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEAD 246
Query: 633 RILNMDFEVEVDKILRAIPRE-RHTYLFSATMTXKV 737
RIL + FE E+ +I++ +P E R T LFSAT T KV
Sbjct: 247 RILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKV 282
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 143 bits (346), Expect = 3e-35
Identities = 76/188 (40%), Positives = 118/188 (62%), Gaps = 8/188 (4%)
Frame = +3
Query: 150 EDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTG 329
+D + +++ G+ + + +++ +K+PS IQ+ AIPV L KD+IG+AETGSGKT
Sbjct: 242 DDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTA 301
Query: 330 AFALPILQALLENPQRY--------FALILTPTRELAFQISEQFEALGASIGVKCAVIVG 485
AF +P++ A+ + P +A++L PTRELA QI + +G +C +VG
Sbjct: 302 AFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVG 361
Query: 486 GMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEV 665
G Q+ +S+ HI++ATPGRL+D LE + F L Y+VMDEADR+L+M FE +V
Sbjct: 362 GHAFEEQSFQMSQGAHIVVATPGRLLDCLER-RLFVLSQCTYVVMDEADRMLDMGFEDDV 420
Query: 666 DKILRAIP 689
+KIL ++P
Sbjct: 421 NKILSSLP 428
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 141 bits (341), Expect = 1e-34
Identities = 75/186 (40%), Positives = 113/186 (60%), Gaps = 3/186 (1%)
Frame = +3
Query: 177 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 356
F+ +G+ L A + +K P+ IQ++ IP+ L G+D++G+A TGSGKT AF +P+++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 357 L---LENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 527
L L N ALIL+P RELA Q + + ++ IVGG+ + Q +LS K
Sbjct: 131 LKSTLANSNTR-ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGK 189
Query: 528 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPRERHTY 707
P I++ATPGR + HL+ L ++Y+V DEADR+ M F ++ +IL A+P R T
Sbjct: 190 PDIVVATPGRFL-HLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTL 248
Query: 708 LFSATM 725
LFSAT+
Sbjct: 249 LFSATL 254
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 136 bits (330), Expect = 2e-33
Identities = 76/193 (39%), Positives = 119/193 (61%), Gaps = 5/193 (2%)
Frame = +3
Query: 174 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL- 350
TF++ G + + + ++L ++ P+ IQ++A P+A+ G+D++G++ TGSGKT ++ LP +
Sbjct: 123 TFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIV 182
Query: 351 ----QALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALML 518
Q LL L+L PTRELA QI ++ G S ++ + GG+ Q L
Sbjct: 183 HINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDL 242
Query: 519 SKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPRER 698
+ I IATPGRL+D L++ K NLR + YLV+DEADR+L+M FE ++ KI+ I +R
Sbjct: 243 IRGVEICIATPGRLLDMLDSNK-TNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 301
Query: 699 HTYLFSATMTXKV 737
T +FSAT +V
Sbjct: 302 QTVMFSATWPKEV 314
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 132 bits (320), Expect = 4e-32
Identities = 74/171 (43%), Positives = 104/171 (60%), Gaps = 7/171 (4%)
Frame = +3
Query: 231 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF--ALILTPT 404
+ KP IQ IP A +G DIIG A+TGSGKT AF +PIL+ L N + AL++ PT
Sbjct: 142 FSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPT 201
Query: 405 RELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHL-ENT 581
RELA QI + FE + S ++ I GG+ + Q +L+K PH+++ATPGRL + EN
Sbjct: 202 RELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGRLWSVINENN 261
Query: 582 KGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPR----ERHTYLFSAT 722
N + +K LV+DEADR+L E+ K+L + +R T++FSAT
Sbjct: 262 LTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSAT 312
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 130 bits (314), Expect = 2e-31
Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 4/169 (2%)
Frame = +3
Query: 243 SKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYF----ALILTPTRE 410
++IQK+ IP AL G+DI+G A+TGSGKT AF +P+++ L AL+++PTRE
Sbjct: 63 TEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRE 122
Query: 411 LAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGF 590
LA Q E +G +I+GG + + LS+ +I++ TPGRL+ H++ F
Sbjct: 123 LAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSRM-NILVCTPGRLLQHIDQAVNF 181
Query: 591 NLRPLKYLVMDEADRILNMDFEVEVDKILRAIPRERHTYLFSATMTXKV 737
+ L+ L++DEADRIL+M F +D I+ ++P R T LFSAT T V
Sbjct: 182 DTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSV 230
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 126 bits (304), Expect = 3e-30
Identities = 75/201 (37%), Positives = 114/201 (56%), Gaps = 8/201 (3%)
Frame = +3
Query: 159 EDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFA 338
E + TF D + L A + +++KP+ +Q E IP+AL GKD++ A TGSGKT A+
Sbjct: 10 ESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 339 LPILQALL------ENPQRYFALILTPTRELAFQISEQFEALGA--SIGVKCAVIVGGMD 494
+PIL+ LL EN + FAL+L PTRELA Q+ E L A S ++ +
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 495 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKI 674
Q +L P I+IATP R V H+ + L LK+LV+DEAD +L+ + ++ +
Sbjct: 130 DTVQRPLLLDLPDIVIATPSRCVVHVASGV-LPLDKLKFLVIDEADLMLSFGYNEDMKTL 188
Query: 675 LRAIPRERHTYLFSATMTXKV 737
R++PR ++L SAT++ +
Sbjct: 189 SRSLPRGTQSFLMSATLSKNI 209
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 125 bits (302), Expect = 6e-30
Identities = 71/193 (36%), Positives = 109/193 (56%), Gaps = 1/193 (0%)
Frame = +3
Query: 147 TEDTEDDKIT-FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGK 323
TED + T F+D + L E +++PS IQ+E+IP+AL G+DI+ A+ G+GK
Sbjct: 35 TEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Query: 324 TGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVA 503
T AF +P L+ + + LIL PTRELA Q S+ + LG + VK V GG +
Sbjct: 95 TAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRD 154
Query: 504 QALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRA 683
+ L+ HI++ TPGR++D L + VMDEAD++L+ +F ++++L
Sbjct: 155 DIIRLNDTVHIVVGTPGRVLD-LAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSY 213
Query: 684 IPRERHTYLFSAT 722
P+ R L+SAT
Sbjct: 214 FPKNRQISLYSAT 226
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 124 bits (299), Expect = 1e-29
Identities = 70/173 (40%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Frame = +3
Query: 225 LKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL-----QALLENPQRYFAL 389
L ++KP+ IQ +AIP G+D+IG+A+TGSGKT AF LP+ Q L+ + A+
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query: 390 ILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDH 569
I+TPTRELA QI + + + ++ GG + Q L + I++ TPGR++D
Sbjct: 496 IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDV 555
Query: 570 LENTKG--FNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPRERHTYLFSAT 722
L G NL YLV+DEADR+ ++ FE +V +I+ I +R T LFSAT
Sbjct: 556 LSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSAT 608
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 118 bits (285), Expect = 7e-28
Identities = 76/190 (40%), Positives = 104/190 (54%), Gaps = 9/190 (4%)
Frame = +3
Query: 195 VDVLCEACEELK-WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQ---ALL 362
+DV + E LK +K+P+ IQ P L G+D++G+AETGSGKT AF +P LQ L
Sbjct: 172 LDVSAKLREGLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLS 231
Query: 363 ENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIII 542
+N L+++PTRELA Q E +L +K V+ GG QA +K +II
Sbjct: 232 DNKSVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA-RAAKNASVII 290
Query: 543 ATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIP-----RERHTY 707
TPGRL+D L N + + YLV+DEADR+L+ FE ++ I+ P R T
Sbjct: 291 GTPGRLLD-LINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTV 349
Query: 708 LFSATMTXKV 737
FSAT V
Sbjct: 350 FFSATWPESV 359
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 115 bits (276), Expect = 8e-27
Identities = 67/203 (33%), Positives = 108/203 (53%), Gaps = 3/203 (1%)
Frame = +3
Query: 138 ENVTEDTEDDK---ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAE 308
ENV T +D +F+++ + + L ++ PS +Q AI G+D+I A+
Sbjct: 7 ENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ 66
Query: 309 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGG 488
+G+GKT F++ ILQ++ + + ALIL+PTRELA QI ALG + V+C +GG
Sbjct: 67 SGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGG 126
Query: 489 MDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVD 668
+ L H++ TPGR+ D + + R +K L++DEAD +LN F+ ++
Sbjct: 127 TSVGNDIKKLDYGQHVVSGTPGRVTDMIRR-RNLRTRNVKMLILDEADELLNQGFKEQIY 185
Query: 669 KILRAIPRERHTYLFSATMTXKV 737
I R +P + SAT+ V
Sbjct: 186 DIYRYLPPGTQVVVVSATLPQDV 208
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 111 bits (268), Expect = 8e-26
Identities = 63/192 (32%), Positives = 108/192 (56%), Gaps = 5/192 (2%)
Frame = +3
Query: 177 FKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQA 356
F+D + L A + ++ PS++Q+ IP ++LG D++ A++G GKT F L LQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 357 LLENPQRYFALILTPTRELAFQISEQFEALGASI-GVKCAVIVGGMDMVAQALML---SK 524
+ L+L TRELAFQI ++ + V+ AV GG+++ SK
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 525 KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRIL-NMDFEVEVDKILRAIPRERH 701
PHI++ATPGRL + L K + +K+ V+DE D++L ++D ++ ++ RA P ++
Sbjct: 173 SPHIVVATPGRL-NALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQ 231
Query: 702 TYLFSATMTXKV 737
+FSAT++ ++
Sbjct: 232 VMMFSATLSNEI 243
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 110 bits (265), Expect = 2e-25
Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 1/201 (0%)
Frame = +3
Query: 138 ENVTEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 314
++V E D+ I TF D+ + L +++PS IQ+ AI L +D++ A++G
Sbjct: 7 DSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSG 66
Query: 315 SGKTGAFALPILQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMD 494
+GKT F++ +LQ + + ++ ALIL PTRELA QI + ALG + V+C +GG
Sbjct: 67 TGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTL 126
Query: 495 MVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKI 674
+ L H+++ TPGR+ D ++ + ++ V+DEAD +L+ F+ ++ I
Sbjct: 127 VRDDMAALQAGVHVVVGTPGRVHDMIQR-RALPTDAVQMFVLDEADEMLSRGFKDQIYDI 185
Query: 675 LRAIPRERHTYLFSATMTXKV 737
+ +P L SATM V
Sbjct: 186 FQLLPPTAQVVLLSATMPQDV 206
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 103 bits (248), Expect = 2e-23
Identities = 65/186 (34%), Positives = 100/186 (53%), Gaps = 22/186 (11%)
Frame = +3
Query: 231 WKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLEN-------------- 368
+ +P+ +QK +IP+ G+D++ A+TGSGKT F PIL +
Sbjct: 189 YTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMG 248
Query: 369 --PQRYF--ALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHI 536
P++ + LIL PTREL QI E+ V+ + GG D+ AQ + + +
Sbjct: 249 YRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDL 308
Query: 537 IIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIP----RERHT 704
+ ATPGRLVD ++ + +L +K+LV+DEADR+L+M FE ++ I+ ER T
Sbjct: 309 LSATPGRLVDLIDRGR-ISLANIKFLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQT 367
Query: 705 YLFSAT 722
+FSAT
Sbjct: 368 LMFSAT 373
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 96.7 bits (230), Expect = 3e-21
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 12/158 (7%)
Frame = +3
Query: 240 PSKIQKEAIPVALL--GKDIIGLAETGSGKTGAFALPILQALLENPQRY-------FALI 392
P+ IQ +P L KD A+TGSGKT A+ LPI+Q L+ P+ +A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 393 LTPTRELAFQISEQFEALG---ASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLV 563
+ PTREL QI L S + ++GG ++ + K +I+I TPGRL
Sbjct: 222 MAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGRLA 281
Query: 564 DHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKIL 677
DHLENT+ ++ ++++V+DE DR+++M FE + KIL
Sbjct: 282 DHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKIL 319
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 96.3 bits (229), Expect = 4e-21
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Frame = +3
Query: 267 PVALLGKDIIGLAETGSGKTGAFALPILQALLENP-QRYFALILTPTRELAFQISEQFEA 443
P+ G D+ A TGSGKT ++ +PI+Q L R +++ PTREL Q+++ FE
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTFEY 227
Query: 444 LGASIGVKCAVIVGGMDMVAQALMLSKKPH-----IIIATPGRLVDHLENTKGFNLRPLK 608
+ G++ G + + L+ + ++++TPGRLVDH+ N + F+L+ L+
Sbjct: 228 YMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLR 287
Query: 609 YLVMDEADRILNMDFEVEVDKILRAI 686
Y+V+DEADR+L+ F+ VD ++ I
Sbjct: 288 YMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 96.3 bits (229), Expect = 4e-21
Identities = 64/191 (33%), Positives = 108/191 (56%), Gaps = 3/191 (1%)
Frame = +3
Query: 174 TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLG--KDIIGLAETGSGKTGAFALPI 347
+F++L + L + +K++KPSKIQ++A+P+ L +++IG +++G+GKT AFAL +
Sbjct: 115 SFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTM 174
Query: 348 LQALLENPQRYFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKK 527
L + + + A+ L P+RELA QI + +G VK A G D V + + +
Sbjct: 175 LSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKGAKIDAQ 232
Query: 528 PHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMD-FEVEVDKILRAIPRERHT 704
I+I TPG ++D L + + R +K V+DEAD +L+ + +I +PR
Sbjct: 233 --IVIGTPGTVMD-LMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 705 YLFSATMTXKV 737
LFSAT + +V
Sbjct: 290 VLFSATFSERV 300
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 95.5 bits (227), Expect = 7e-21
Identities = 66/182 (36%), Positives = 95/182 (52%), Gaps = 3/182 (1%)
Frame = +3
Query: 201 VLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQAL-LENPQR 377
+LCE ++ + + IQ+ AIP +D++ A TGSGKT A+ PILQ L L P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG 115
Query: 378 YFALILTPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQ-ALMLSKKPHIIIATPG 554
Y A+I+ PTREL QI Q E L +K + + + + A L +K + I TP
Sbjct: 116 YRAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPM 175
Query: 555 RLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPRER-HTYLFSATMTX 731
RLV ++ G + +++ VMDEADR+ F + D IL A LFSAT+
Sbjct: 176 RLVQAIQT--GLSFEKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPS 233
Query: 732 KV 737
+V
Sbjct: 234 RV 235
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 95.5 bits (227), Expect = 7e-21
Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Frame = +3
Query: 171 ITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPIL 350
++F+ + + L A +KK + +Q AIP+ L KD++ A TGSGKT A+ LP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 351 QALLE---NPQRYFALILTPTRELAFQI--------SEQFEALGASIGVKCAVIVGGMDM 497
+ + ALI+ PTRELA QI + Q ++L + + +GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 498 VAQAL--MLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMDFEVEVDK 671
+ L K P ++I TPGRL + L + + L+ L++DEAD +++M F+ +
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSHISS---KHLEILILDEADTLIDMGFQRTLQS 177
Query: 672 ILRAIPRERHTYLFSATMTXKV 737
I+ +P++R T LFSATM V
Sbjct: 178 IISQLPKQRRTGLFSATMNDTV 199
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 88.6 bits (210), Expect = 8e-19
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Frame = +3
Query: 303 AETGSGKTGAFALPILQALLE-----NPQRYFALILTPTRELAFQISEQFEALGASIGVK 467
A+TG+GKT AF L + +L+ N + ++IL+PTRELA QI E+ L G++
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIR 142
Query: 468 CAVIVGGMDMVAQALMLSK-KPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILN 644
+ +GG + + + + +++IATPGRL DHL+N + ++DEADR+++
Sbjct: 143 VSYAIGGNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMD 202
Query: 645 MDFEVEVDKILRAIPRERHTYL-FSATMTXKV 737
M F + I A+ + L FSATM KV
Sbjct: 203 MGFAESILNIHEAVTTTKTRKLCFSATMPPKV 234
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 39.1 bits (87), Expect = 6e-04
Identities = 46/159 (28%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Frame = +3
Query: 234 KKPSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTREL 413
+K K Q +AI G +I T SGK+ + +PILQ+LLE+ Q A + PT+ L
Sbjct: 310 EKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS-TAFFVFPTKSL 368
Query: 414 A-FQISEQFEALGASIGVKCAVI--VGGMDMVAQALMLSKKPHIIIATPGRLVDHL---E 575
A Q + L +K + G + + + +II P L +
Sbjct: 369 AQDQKKSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNA 428
Query: 576 NTKGFNLRPLKYLVMDEADRILNMDFEVEVDKILRAIPR 692
N + + LK V+DEA + N F V V +LR + R
Sbjct: 429 NRWYYFFKNLKLFVLDEA-HVYNGIFGVHVAFVLRRMRR 466
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.3 bits (70), Expect = 0.074
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Frame = +3
Query: 243 SKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQALLE--------NPQRYFALIL 395
++IQ P+A ++I+ A TG+GKT L IL L + N Q + + +
Sbjct: 521 NRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYI 580
Query: 396 TPTRELAFQISEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATP 551
P + L ++ F ++ A + G + Q + + II+ TP
Sbjct: 581 APLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQI---SETQIIVTTP 629
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 31.9 bits (69), Expect = 0.098
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 246 KIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLE-NPQRYFALILTPTREL 413
K Q EAI L GKD+ L TG GK+ + LP A++E R L+++P L
Sbjct: 522 KNQLEAINGTLSGKDVFILMPTGGGKSLCYQLP---AVIEGGASRGVTLVISPLLSL 575
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.9 bits (64), Expect = 0.40
Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Frame = +3
Query: 183 DLGVVDVLCEACEELKWKKPSKIQKEAIPVAL-LGKDIIGLAETGSGKTGAFALPILQAL 359
++ +D+LC L ++ ++IQ P+A ++++ A TG+GKT L +LQ +
Sbjct: 260 EISSMDILCRKTF-LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTI 318
Query: 360 ---------------LENPQRYFALI-LTPTRELAFQISEQFEALGASIGVKCAVIVGGM 491
L+ + F ++ + P + LA ++ E+ A +G+K + G M
Sbjct: 319 SNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGDM 378
Query: 492 DMVAQALMLSKKPHIIIATP 551
+ + + I++ TP
Sbjct: 379 QLTKTEI---AETQILVTTP 395
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 29.5 bits (63), Expect = 0.52
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 4/163 (2%)
Frame = +3
Query: 249 IQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALI--LTPTRELAFQ 422
++++ + V + +I + ETGSGKT A Q L E+ +I P R A
Sbjct: 497 VREQLLSVIRDNQVLIVVGETGSGKTTQLA----QFLYEDGYHRNGMIGCTQPRRVAAMS 552
Query: 423 ISEQF-EALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLR 599
++++ E +G +G + D+ ++ T G L+ E+ NL
Sbjct: 553 VAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIK------YMTDGVLL--RESLMQNNLE 604
Query: 600 PLKYLVMDEA-DRILNMDFEVEVDKILRAIPRERHTYLFSATM 725
++MDEA +R LN D + + K + + R+ + SATM
Sbjct: 605 KYSVIIMDEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATM 647
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 29.5 bits (63), Expect = 0.52
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Frame = -3
Query: 509 SLCHHVHTTNYYCTFYTYACTKCFKLF*YLKCQFPCWSKY----KCKISLRVL-Q*CLKY 345
+L +H ++ N T T C KC+ L + C F C S + C + L V+ + C K
Sbjct: 1235 TLVNHCNSCNS-TTSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLCLHVMHEDCYKE 1293
Query: 344 GQGKGTCLTRTC 309
G ++++C
Sbjct: 1294 WFSNGDSISQSC 1305
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 594 LRPLKYLVMDEADRILNMDFEVEVDKILRAIPRER 698
LR +L++DEA L+ + EV VDK ++++ R
Sbjct: 635 LRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNR 669
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 240 PSKIQKEAIPVALLGKDIIGLAETGSGKTGAFALPILQALLENPQRYFALILTPTRELAF 419
P + Q+E + + + + +A T SGKT + ++ +L + + + PT+ L
Sbjct: 736 PDEWQRETLDILDRDESVFVVAPTSSGKT-FISFYAMEKVLRDNDDGVVIYVAPTKALVN 794
Query: 420 QISEQFEA 443
Q+S + A
Sbjct: 795 QLSAEVYA 802
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 309 TGSGKTGAFALPILQALLENPQRYFALILTPTRELAFQ 422
TGSGKT F I A P LIL +ELA Q
Sbjct: 55 TGSGKTALFPHFIKYAPTLRPNSEQCLILVHRKELALQ 92
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 695 FSWYRTEYLVNFHFEIH 645
F WY T Y +NFH H
Sbjct: 256 FLWYSTSYSLNFHLFYH 272
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 26.2 bits (55), Expect = 4.9
Identities = 22/95 (23%), Positives = 35/95 (36%)
Frame = +3
Query: 135 TENVTEDTEDDKITFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETG 314
T+ + + EDD I K V + L E + +W I + A + + ++ L E
Sbjct: 68 TDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNTNLDATMDQTVVVLHEKL 127
Query: 315 SGKTGAFALPILQALLENPQRYFALILTPTRELAF 419
LP L LE P + +AF
Sbjct: 128 ENDRILMYLPHLDKSLEQPYNHLPYYHPAVAGIAF 162
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 476 NSWWYGHGGTSSNAIQETSHN 538
NSWWY + G S++ +E HN
Sbjct: 322 NSWWYPN-GLSNSMPEEIQHN 341
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 586 PLVFSRWSTNLPGVAMIM*GFLDSIRAC 503
P VFS + NLPG A+ FLD+ + C
Sbjct: 345 PPVFSHYVMNLPGSAI---EFLDAFKGC 369
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 6.4
Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 2/160 (1%)
Frame = +3
Query: 252 QKEAIPVALLGKDIIGLAETGSGKT--GAFALPILQALLENPQRYFALILTPTRELAFQI 425
QKEAI +G + A T +GKT +A+ + Q + A+ +P + L+ Q
Sbjct: 285 QKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTK-----AIYTSPIKALSNQK 339
Query: 426 SEQFEALGASIGVKCAVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPL 605
F+ +G ++ G + + + L I+ + R D +R +
Sbjct: 340 FRDFKHKFEDVG----ILTGDVQVNPEGSCLLMTTEILRSMLYRGAD--------LIRDV 387
Query: 606 KYLVMDEADRILNMDFEVEVDKILRAIPRERHTYLFSATM 725
++++ DE + +++ V ++++ +P L SAT+
Sbjct: 388 EFVIFDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATV 427
>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
2|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +3
Query: 15 FNLRAFFVFPKTMLIYRKCLQXRKAMES----ATNQXSEVEQTPTENVTEDTEDDKITFK 182
F ++ F K M IY C + K+M S + +QTP E ED + + +
Sbjct: 50 FKIKKTTEFSKLMKIY--CARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLE 107
Query: 183 DLGVVDVLC 209
LG LC
Sbjct: 108 QLGGCTHLC 116
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 503 CHHVHTTNYYCTFYTYACTKC 441
CH + T +C F T TKC
Sbjct: 429 CHPISETRAHCPFATDVLTKC 449
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,191
Number of Sequences: 5004
Number of extensions: 67499
Number of successful extensions: 278
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -