Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P21
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      126   2e-31
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  126 bits (305), Expect = 2e-31
 Identities = 77/213 (36%), Positives = 125/213 (58%), Gaps = 14/213 (6%)
 Frame = +3

Query: 141 NVTEDTEDDKI-TFKDLGVVDVLCEACEELKWKKPSKIQKEAIPVALLGKDIIGLAETGS 317
           NV+ D     I +F+  G+ +++ +  ++  +KKP+ +QK A+P+ + G+D++  A+TGS
Sbjct: 185 NVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGS 244

Query: 318 GKTGAFALPILQALLEN------PQRYF---ALILTPTRELAFQISEQFEALGASIGVKC 470
           GKT AFA+PI+  LLE          Y     +I++PTREL  QI +Q      +  +K 
Sbjct: 245 GKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKT 304

Query: 471 AVIVGGMDMVAQALMLSKKPHIIIATPGRLVDHLENTKGFNLRPLKYLVMDEADRILNMD 650
            V  GG  ++ Q   LS   HI++ATPGRL+D +E  +      +++LV+DEADR+L+M 
Sbjct: 305 VVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGR-VKFSSVQFLVLDEADRMLDMG 363

Query: 651 FEVEVDKIL---RAIP-RERHTYLFSATMTXKV 737
           F   ++K++     +P  ER T +FSAT   +V
Sbjct: 364 FLPSIEKMVDHETMVPLGERQTLMFSATFPDEV 396


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 491 HTTNYYCTFYTYACTKCFK 435
           ++ ++   F+   C KCFK
Sbjct: 362 YSADFRLAFWRLTCRKCFK 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,991
Number of Sequences: 438
Number of extensions: 4895
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)