Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_P20
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580... 67 1e-11
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 31 0.74
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 30 2.2
03_02_0619 + 9904405-9904586,9905315-9906764,9907320-9907509,990... 29 3.0
01_01_0231 + 1951047-1951499 29 3.0
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 3.0
01_01_0229 - 1943473-1943922 29 3.0
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 3.9
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224... 28 6.9
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 28 6.9
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 9.1
>03_06_0724 -
35757228-35757323,35757837-35757893,35757983-35758075,
35758271-35758336,35758444-35758653,35758750-35759022,
35759112-35759251,35759330-35759471
Length = 358
Score = 67.3 bits (157), Expect = 1e-11
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 5/197 (2%)
Frame = +2
Query: 74 PNKXHKEIXTNSXSXKXQASGSEKASDFDSXGNYVGEKE-LQADFEGRNPEDSDFHGIKQ 250
P K K +S + + +SD D + E + +QADF +P+ DFHG+K
Sbjct: 58 PPKRAKRAEPSSDEERYSSDDESYSSDSDDSDDASEELDTVQADFAFYDPKPGDFHGVKL 117
Query: 251 LLRQLFLKSNVDLGGLAQIIISQNYIGSVVK----QCLXXXXXXXXXXXXXXXXVFGVTT 418
LL+ DL G +I+ Q +G+VVK + +FG+ +
Sbjct: 118 LLKTYLDSKPWDLTGFVDLILEQTTVGTVVKIADDEEDGEGNGADGSSTGGNDDLFGLIS 177
Query: 419 VVNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 598
V+N+ + + +++ L + D TK+ +K +L D + GL++ R +N P
Sbjct: 178 VLNLGRYSEHRCMKDLKDYLLAVC---GDKDTKKKLKQMLGDKAPDVGLLVCRRFVNFPY 234
Query: 599 AISVPLFASLQTELEKA 649
+ ++ SL E+ A
Sbjct: 235 ELVPKMYESLFDEVSWA 251
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -2
Query: 534 IYLINSLVLG-SAFS*DSFVSNSLICATLGSFFL 436
+ + +SLVL SA S D + NSLIC +LG FFL
Sbjct: 524 VLMASSLVLFLSAVSPDFVLGNSLICMSLGVFFL 557
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 422 VNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 598
+NI + + SV+ I + L LS+ K+L++ ADD+ G NE PA
Sbjct: 689 ININDQSKQASVSLILDSLKDLSEAELSTIRKQLLEEFSADDACPLGSHSNESTSQSPA 747
>03_02_0619 +
9904405-9904586,9905315-9906764,9907320-9907509,
9909578-9910164
Length = 802
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 342 FTTLPM*FCDIIIWASPPRST-FDFRNSCLSSCLIPWKS 229
F L + I W P R FD N+ LS L PWKS
Sbjct: 685 FDRLERKYNKISAWPRPERRLLFDLANTVLSEILAPWKS 723
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 435 KEKMNPVWHRSENCLQNYLRRMQIPE 512
KE N WHR E ++RR ++PE
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPE 113
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 435 KEKMNPVWHRSENCLQNYLRRMQIPE 512
KE N WHR E ++RR ++PE
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPE 113
>01_01_0229 - 1943473-1943922
Length = 149
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 435 KEKMNPVWHRSENCLQNYLRRMQIPE 512
KE N WHR E ++RR ++PE
Sbjct: 87 KEDKNDKWHRVERSSGQFMRRFRLPE 112
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 65 AKMPNKXHKEIXTNSXSXKXQASGSEKASDFDSXGNYVGEKELQADFEGRNPED-SDFHG 241
A MP+K H+ ++ + Q + ++ S V E + ++ ++GRN SD +
Sbjct: 2217 ASMPSKPHQSSSSSGQQYQHQVNNQDRRSRVTQKTGAVNEWQRRSGYQGRNQNSGSDKNL 2276
Query: 242 IKQLLRQLFLKSNVDLGGLA 301
++Q+++ + G A
Sbjct: 2277 GTGRMKQIYVAKSSSASGHA 2296
>10_01_0209 +
2236530-2237301,2239196-2239297,2239535-2239716,
2240210-2240420,2240526-2240766,2240861-2241011,
2241116-2241424
Length = 655
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 170 NYVGEKELQADFEGRNPEDSDF 235
N GE+EL D EG+NPE S F
Sbjct: 303 NLQGEEELVWDLEGKNPEFSVF 324
>01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 627 YRLNLRKLIGKICYTTLNTLFGSVKLTLLESHXKCFLQIK 746
+ +NLR+ +G + T F + +++ E CF +IK
Sbjct: 901 FDINLRRQLGALSSKTFEVFFKLINISISEDETVCFNRIK 940
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +2
Query: 434 KRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVP 613
+R+ EPS LTK S + K++IK +L+D+ G+ ++ I A V
Sbjct: 162 ERRREPSPLTPTSCLTKCSLHGRERDKKQVIKLLLSDEYNCQGVY---SVVPIVGAAGVG 218
Query: 614 LFASLQTELEKAHRKNMLYNFKYLIWISKTY 706
SL + ++ K +W+ + +
Sbjct: 219 K-TSLVQHIYNDEALRSKFDMKMWVWVCQEF 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,027
Number of Sequences: 37544
Number of extensions: 246848
Number of successful extensions: 596
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -