Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P15
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   4.8  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   6.3  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    26   6.3  

>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 262  GNEKAKLGILGSNGGIVGICIEGHISLGN 176
            GN     GILG    IVG+ ++G  ++GN
Sbjct: 1164 GNSSLVEGILGQTASIVGMPLKGISTVGN 1192


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 159 DDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIK 281
           D  +  +P+  W S  + T  P DP++P  AF    P NIK
Sbjct: 817 DLGYEHYPTCPWISDLLKTYFPQDPEVPFLAFP-DFPFNIK 856


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 326 HVNPAVGLSGLWFSF-LNVIRRGERKSKVRNFG 231
           HVN   G+ G+WF F ++ +R  ER+ +   FG
Sbjct: 325 HVNFHGGIPGVWFQFDISPMRVIERQVRGNTFG 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,332
Number of Sequences: 5004
Number of extensions: 67897
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)