Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P15
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938...    31   0.94 
12_02_0671 + 21725663-21726046                                         30   2.2  
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675...    29   3.8  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    29   3.8  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    28   8.8  

>07_03_0829 -
           21792924-21793247,21793332-21793482,21793577-21793811,
           21793900-21794110,21794218-21794435,21794536-21794671,
           21796732-21797517
          Length = 686

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 135 AXAGFVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSF 260
           A  GF+W +   P + +  W  +Q    P  +P   +F F F
Sbjct: 209 APEGFIWYNGTSPVYRNGPWDGLQFSGEPEMEPNNTSFRFEF 250


>12_02_0671 + 21725663-21726046
          Length = 127

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 274 LSGEGNEKAKLGILGSNG---GIVGICIEGHISLGNPGKLSS 158
           L+G G+   +LG+L + G   G VG C+EG    G  G+L S
Sbjct: 27  LAGGGDRHLQLGMLSTGGECRGTVGECLEGGDVDGEEGELGS 68


>06_01_0881 +
           6754600-6754681,6754742-6755284,6755461-6755523,
           6755653-6755666
          Length = 233

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 171 PGFPS-DMWPSIQIPTIPPFDPKIPNFAFS 257
           PG P     P+IQIP +PP  P +P+ + +
Sbjct: 66  PGLPQLQPLPTIQIPELPPLPPLLPSVSIT 95


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 189 MWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTK--PQPGQT 308
           M P   I T+PP  P +P F+   PSP  I ++K  P P QT
Sbjct: 119 MPPPPPIDTLPPPPPPLPEFS---PSPAKIHRSKSMPLPPQT 157


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -3

Query: 262 GNEKAKLGILGSNGGIVGICIEGHISLGNPGKLSSCQTKPAXAMVINDNIKRNCVNAXXT 83
           G+E    G   SNG +V   +  H+S  +  KLSS Q     ++   D +   C++    
Sbjct: 47  GDEGTPTGTTPSNGNVVPFSL--HLSSESTSKLSSTQANGLNSVTCKDVLGGFCIDDQAQ 104

Query: 82  RLK 74
            +K
Sbjct: 105 EIK 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,783
Number of Sequences: 37544
Number of extensions: 397498
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)