Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P15
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)               31   1.7  
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)                   29   3.9  

>SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)
          Length = 852

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 174 GFPSDMWPSIQIPTIPPFDPKIPNFAF 254
           G PSD WP    P +PPF+P   N  F
Sbjct: 54  GRPSDKWPR---PALPPFEPASDNIQF 77


>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +1

Query: 94  RSRSFFLCCH*SPSRALALFGRTITSRDSQAICGPLYRSQRFRHSIPKF 240
           R   F LCC   PSRAL +  R I  RD Q      Y    +RH  P+F
Sbjct: 701 RPNYFGLCCQKGPSRALGMLSREI--RDDQVSASSSY---DYRHG-PRF 743


>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
          Length = 1624

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 27/74 (36%), Positives = 34/74 (45%)
 Frame = +1

Query: 64   CXSLLTAXXWRSRSFFLCCH*SPSRALALFGRTITSRDSQAICGPLYRSQRFRHSIPKFL 243
            C + LT   WR R F  C    P       GR  + RD++A C P   S R RH+ P+  
Sbjct: 1175 CGTELTE--WRKRHFVSCSSRWPR------GRA-SRRDARA-CAPTMPSARLRHTQPRKP 1224

Query: 244  TLLFRSPLLITLRK 285
            TLL     L T R+
Sbjct: 1225 TLLVSLFGLYTRRR 1238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,271,372
Number of Sequences: 59808
Number of extensions: 477918
Number of successful extensions: 843
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)