Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P15
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    25   0.94 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 118 CH*SPSRALALFGRTITSRDSQAICGPLYRSQRFR 222
           C  SPS          + RDS  ICG   RSQ FR
Sbjct: 331 CRCSPSNPSITRTGLSSVRDSSIICGGNKRSQVFR 365


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 187 SLGNPGKLSSCQTKPAXA 134
           S  NPG + +C T PA A
Sbjct: 20  SSANPGTIQACTTSPATA 37


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 RHFSHHTFISI*FHLKYFY 512
           ++ SHH  I I   LKYFY
Sbjct: 523 KYDSHHKLIEIPEDLKYFY 541


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 456 RHFSHHTFISI*FHLKYFY 512
           ++ SHH  I I   LKYFY
Sbjct: 523 KYDSHHKLIEIPEDLKYFY 541


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 878 LLDCYLKFYCI*IIXG*LWYVVVKICIEIKSR 783
           +L C+   Y I I+   L+Y++V + I++  R
Sbjct: 106 VLSCWTNIYYIIILAWALFYLLVSLRIDLPWR 137


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 878 LLDCYLKFYCI*IIXG*LWYVVVKICIEIKSR 783
           +L C+   Y I I+   L+Y++V + I++  R
Sbjct: 159 VLSCWTNIYYIIILAWALFYLLVSLRIDLPWR 190


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,339
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)