Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P14
         (735 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY176049-1|AAO19580.1|  515|Anopheles gambiae cytochrome P450 CY...    36   0.002
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   0.79 
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    25   3.2  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   7.4  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   9.8  

>AY176049-1|AAO19580.1|  515|Anopheles gambiae cytochrome P450
           CYP12F3 protein.
          Length = 515

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
 Frame = +3

Query: 225 PIIGTKFDLFSAGG---GKNLHKYIDMRHKQLGPIF-YERLTGKTKLVFISDPTHMKSLF 392
           P +   F  FS GG   G NL +      ++ G I+      G+  +V  S P   + +F
Sbjct: 46  PTLWQLFRGFSKGGCYDGLNLIELHIRLRQEYGDIYRIPAAMGRADVVMSSAPEDFEKVF 105

Query: 393 LNLEGKYPAHILPEPWVLYEK-----LYGSKRGLFFMDGEDWLINRRIMNKHLL 539
              EG+YP     +    Y +     ++G   GL    GE W   RRI N  LL
Sbjct: 106 -RTEGQYPVRRSFDTMTYYRQQVRPDIFGELGGLVTSQGESWRKMRRICNPVLL 158


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 0.79
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
 Frame = +3

Query: 102 FPSMSSIRSAVRSRNSNRC---SMSTKPHKSLRTIDEMPHKKSLPIIGTKFDL------- 251
           + +M+ ++ A   ++  RC   S +T+  K L   +  P  K L + GT           
Sbjct: 473 YNTMAHVKDAREEKHHERCAKQSETTRIEKQLEQFESAPRSK-LAVYGTNMPALVARIRQ 531

Query: 252 ------FSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLVFISDPTHMKSLFLNLEGKY 413
                 FS      L +YI++R+K+   I    L G     F+S     ++L   L+ ++
Sbjct: 532 LHQQGQFSEMPRGPLGQYIEVRNKKWSGIVETALGGCLSAFFVSTQEDWRTLDALLKREF 591

Query: 414 P 416
           P
Sbjct: 592 P 592


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 489 DGEDWLINRR-IMNKHLLREDSDVWLRAPIRTAVFHFICNWKLRAQSGNFSPNLES 653
           + ++W    R I  +  L E++D W R  +    FH + N +   ++G    +LE+
Sbjct: 69  ENQEWKQTARWIKYEENLEEEADRWGRPHVAALSFHSLLNLRHCLETGVVLMSLEA 124


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 254 FCRWRKKLTQIYRHASQAIRTYILREINRKDKTCL 358
           F R R  ++ I R         + R  N +DK CL
Sbjct: 605 FRRGRSTISAIQRVVDAGTAAKLFRRTNTRDKRCL 639


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +2

Query: 254 FCRWRKKLTQIYRHASQAIRTYILREINRKDKTCL 358
           F R R   + I R      R    R  N +DK CL
Sbjct: 544 FRRGRSTFSAIQRVVDAGRRAKSFRRTNHRDKRCL 578


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,785
Number of Sequences: 2352
Number of extensions: 15953
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)