Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P14
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    27   0.24 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.3  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   1.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   9.1  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 189 RTIDEMPHKKSLPIIGTKFDLFSAGGGKNLHKYID 293
           +T+ ++P   SLPI GT++ +FS  G   L+K  D
Sbjct: 48  KTVSKVPGPFSLPIFGTRW-IFSCIGYYKLNKIHD 81


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 63  TYIRILFNLKMHRFPSMSS 119
           T++R+L +L MH +P + S
Sbjct: 126 TFLRVLLHLAMHDYPPLVS 144


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 63  TYIRILFNLKMHRFPSMSS 119
           T++R+L +L MH +P + S
Sbjct: 94  TFLRVLLHLAMHDYPPLVS 112


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 186 LRTIDEMPHKKSLPIIGTKFDLFSA 260
           L   +++P   +LP+IG   DLF +
Sbjct: 38  LELAEKIPGPPALPLIGNALDLFGS 62


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 105 PSMSSIRSAVRSRNSNRCSMSTKPH-KSLR 191
           P  S+  + VR+  ++ CS++  PH K LR
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSPHQKKLR 361


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 320 ILREINRKDKTCLY-QRPNSHE 382
           ++R +  K+KTC Y   P++ E
Sbjct: 377 LMRTVRGKEKTCYYPYHPSTQE 398


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 320 ILREINRKDKTCLY-QRPNSHE 382
           ++R +  K+KTC Y   P++ E
Sbjct: 377 LMRTVRGKEKTCYYPYHPSTQE 398


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 55  KWLLISGSSLI*KCIVSRR 111
           KWL I+ S+   +C+  RR
Sbjct: 72  KWLSINHSACAIRCLAQRR 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,182
Number of Sequences: 438
Number of extensions: 4899
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)