Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P13
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)              111   4e-25
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           62   2e-10
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   5.2  
SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                27   8.8  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score =  111 bits (266), Expect = 4e-25
 Identities = 51/96 (53%), Positives = 63/96 (65%)
 Frame = +1

Query: 82  GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 261
           G+  +     K T+Y   K+ +     + +RRYDRKQ G+GGQ+KP+F         IVL
Sbjct: 21  GKKCRRHTLHKVTQY---KTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVL 77

Query: 262 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 369
           R+EC  CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 78  RMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +1

Query: 253 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 351
           IVLR+EC  CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7   IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 265  LECADCKVRSQVALKRCKHFELG 333
            +EC +CK R  +A   C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135


>SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 25.4 bits (53), Expect(2) = 5.2
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +1

Query: 79  AGRTAKNVNATKYTRYHSTKSPRKG-----TLPRXRRRYDRKQQ 195
           AG T+KN ++++  R H  + P        T    R+R D K++
Sbjct: 29  AGMTSKNTSSSRKARMHQVEGPGNSRCCPETAETRRKRVDNKRR 72



 Score = 21.0 bits (42), Expect(2) = 5.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 262 RLECADCKVRSQVALKRCKHFELGGDKKRKGQM 360
           R  C  C++  ++ L++       GD   KG+M
Sbjct: 71  RRVCRLCRLSHRLVLRKKTLARTSGDSAGKGEM 103


>SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 91  AKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKP 219
           A  V+  +Y    STK  RK    + +R+ D+K+Q  G    P
Sbjct: 59  AARVSLAQYKTKQSTKKQRKVLRGQKKRKDDQKKQAEGANYAP 101


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 382 LEAFKIGSSVPFSSCHHRAQSACI 311
           +E + +G S+ +  C H   SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,991
Number of Sequences: 59808
Number of extensions: 241299
Number of successful extensions: 810
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)