Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_P13
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 103 1e-22
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 103 1e-22
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 28 4.4
Z22176-12|CAO82057.1| 546|Caenorhabditis elegans Hypothetical p... 28 4.4
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 28 4.4
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 28 4.4
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 103 bits (246), Expect = 1e-22
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +1
Query: 82 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 261
G+ K+ N K T+Y K ++ + RRRYDRKQ G+GGQ+KPIF IVL
Sbjct: 14 GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 262 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 369
R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70 RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 57 MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 167
MVNVPK RRT+ +QYKK KE AQG
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 103 bits (246), Expect = 1e-22
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +1
Query: 82 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 261
G+ K+ N K T+Y K ++ + RRRYDRKQ G+GGQ+KPIF IVL
Sbjct: 14 GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 262 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 369
R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70 RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 57 MVNVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 167
MVNVPK RRT+ +QYKK KE AQG
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 29.5 bits (63), Expect = 1.4
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 190 VYDHNVFXPWA-ACLSLDFLYCDTLCTLWHL 101
+YDH+ + W +S+ F++C C +W +
Sbjct: 27 IYDHHYYPMWFWIVISVGFVFCTLSCAVWFM 57
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -2
Query: 217 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEXVRH 38
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 848 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 906
>Z22176-12|CAO82057.1| 546|Caenorhabditis elegans Hypothetical
protein ZK1098.10c protein.
Length = 546
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -2
Query: 217 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEXVRH 38
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 209 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 267
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -2
Query: 217 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEXVRH 38
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 820 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 878
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -2
Query: 217 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEXVRH 38
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 802 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 860
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -2
Query: 217 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFEXVRH 38
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 820 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 878
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 73 NSAGRTAKNVNATKYTRYHSTKSPRKGTLP---RXRRRYDRKQQGYGGQSKPI 222
+S A+N + T H T+S K +L R RRR + +Q Y S PI
Sbjct: 648 SSVAGNARNASGANITTIHVTES--KSSLKKSHRRRRRVAKSRQSYTAGSSPI 698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,951,198
Number of Sequences: 27780
Number of extensions: 169678
Number of successful extensions: 562
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -