Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P11
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)                       59   3e-09
SB_45334| Best HMM Match : Mov34 (HMM E-Value=0.0076)                  40   0.003
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)                 36   0.049
SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)                       30   2.4  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              29   4.2  
SB_45654| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               29   4.2  
SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)                 28   7.4  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      28   7.4  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_33138| Best HMM Match : Mov34 (HMM E-Value=0)
          Length = 195

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 33/121 (27%), Positives = 60/121 (49%)
 Frame = +2

Query: 140 QKVRLSSDVALVCMQHALSTEKEEIMGLLIGEVHDNGALVSIVSSVILRRLDKKPDRVEI 319
           + +++S+   L  + HA S    E+MGL++G+V  +  +V    ++ +   + + +    
Sbjct: 50  KNIKISALALLKMVMHARSGGNLEVMGLMLGKVDGDTMIVMDAFALPVEGTETRVNAQAA 109

Query: 320 SEEQLVQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGI 499
           + E +        E A  VG+    +GWYHSHP    W S +D+ TQ + Q+    FV I
Sbjct: 110 AYEYMAAYI----ESAKSVGRLENAIGWYHSHPGYGCWLSGIDVGTQMVNQQFQEPFVAI 165

Query: 500 I 502
           +
Sbjct: 166 V 166


>SB_45334| Best HMM Match : Mov34 (HMM E-Value=0.0076)
          Length = 174

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +2

Query: 335 VQATVRAEELAAEVGQPLRVVGWYHSHPHITVWPSHVDLATQSMYQR 475
           V  T  +E+LA++    + VVGWYHSHP     PS  D+ TQ+ +Q+
Sbjct: 41  VSQTQASEKLASK---GMAVVGWYHSHPTFAPNPSVRDIETQAKFQQ 84


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
 Frame = +2

Query: 386 LRVVGWYHSHPHITVWPSHVDLATQSMYQRM--------DASFVGIIFAVFLTDQSTKAP 541
           + +VGWYHSHP     PS  D+ +Q  YQ              +G+I + + T + TK  
Sbjct: 1   MHLVGWYHSHPSYQADPSVQDIKSQLRYQHALQQGLSGPQEPCLGLIISPYDTYKPTKES 60

Query: 542 SVQITCFQSINEGASQS-RIEIEMEIVTNTDSLLTNN 649
           + +    Q   EG   S  I + M      D  L+ +
Sbjct: 61  TFRAFWVQRTQEGTPDSLGIPMHMNFNVQQDQFLSQD 97


>SB_38777| Best HMM Match : Mov34 (HMM E-Value=1.6e-19)
          Length = 431

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 386 LRVVGWYHSHPHITVWPSHVDLATQSMYQRMDASFVGII 502
           L  +GW H+HP  T + S VDL T   YQ M    + I+
Sbjct: 333 LITLGWIHTHPTQTAFMSSVDLHTHCSYQLMMPEAIAIV 371


>SB_8333| Best HMM Match : BRCT (HMM E-Value=2.2)
          Length = 181

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 584 SQSRIEIEMEIVTNTDSLLTNNFETLTQLPTILKEEEDEAFNNEISYDDTDDIVTXQHNA 763
           + + + +   ++ + D +L +    L     ILK+++D   + E +  D DDI+  + NA
Sbjct: 2   ASTAVFLSARVLQDKDDILKDKENALPDKDNILKDKDDILKDKENALPDKDDILKDKENA 61


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 311 VEISEEQLVQATVRAEELAAEVGQPLRVVGW 403
           +E++ E +  A  RAEE   ++ +P +VVGW
Sbjct: 818 IELAHEIVSGAIERAEERPKKMNEPTQVVGW 848


>SB_45654| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 301

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 378 PTSAANSSALTVA*TSCSSDISTRSGFLSKRRSITDDTIETSAPLS*TSPISKPMI 211
           PT+  N  A+ +     ++ +    G     R ITDD  E S P++ T P S P +
Sbjct: 33  PTTMFNKLAILILGVLATNLVPEVKGRPKWHRDITDDANEGSGPMNPTGPPSFPTL 88


>SB_51089| Best HMM Match : I-set (HMM E-Value=1.4e-38)
          Length = 1334

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 3/25 (12%)
 Frame = +2

Query: 677 ILKEEEDEAFNNEISY---DDTDDI 742
           ++KE+E++++NNEIS    D TDD+
Sbjct: 208 LVKEKEEDSYNNEISLSEEDPTDDL 232


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = +2

Query: 107  ITITNINFEMLQKVRLSSDVALVCMQ-HALSTEKEEIMGLLIGEVHDNGALVSIVSSVIL 283
            +TI+N  F   +K RL S + +   +   + T K+  + +LIGE   +G    I   +  
Sbjct: 706  LTISN-RFNR-EKRRLESALPIYARKSQIIQTIKDNQVTVLIGET-GSGKSTQIGQYLYD 762

Query: 284  RRLDKKPDRVEISEEQLVQATVRAEELAAEVGQPLRVVGWYHSHP 418
              L  K  ++  ++ + V AT  A++++ E+GQ +  +  Y  HP
Sbjct: 763  AGLADK-GQIVCTQPRKVAATSLAQQVSREMGQKVGKLVGYRQHP 806


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 548  QITCFQSINEGASQSRIEIEMEIVTNTDSLLTNNFETLTQLPTILKEEEDEAFNNEISYD 727
            ++   +S N     S  E+E+   TN D L++NN   L +   I    +    NNE+ YD
Sbjct: 1578 EVVLAKSTNIDKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNI----DKLVSNNEVEYD 1633


>SB_46941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/80 (25%), Positives = 27/80 (33%)
 Frame = +2

Query: 521 DQSTKAPSVQITCFQSINEGASQSRIEIEMEIVTNTDSLLTNNFETLTQLPTILKEEEDE 700
           D   K P  Q    Q I    + +         TNT++   NN+  +    T      + 
Sbjct: 130 DDRDKRPRQQQQQQQQILTNTTNTITNTNTNTNTNTNTT-NNNYNNINTTTTTTTNNNNN 188

Query: 701 AFNNEISYDDTDDIVTXQHN 760
             NN    DD DD     HN
Sbjct: 189 NNNNNNDDDDDDDTDDDDHN 208


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,350,903
Number of Sequences: 59808
Number of extensions: 346659
Number of successful extensions: 951
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)