Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P07
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical ...    81   1e-15
U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protei...    29   3.3  
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC024089-4|AAK09073.2|  239|Caenorhabditis elegans Hypothetical
           protein C36E6.2 protein.
          Length = 239

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 16/183 (8%)
 Frame = +3

Query: 213 IDQNLLLQFSCMNTTDREELIKQMQKLLGPSL-NYNTASFFLDMSNWNLQAAICCYLDYT 389
           ++ +L+ + S M T DRE LI + ++++ P +  ++ A+F+LD++NWNL  AI  + D  
Sbjct: 4   LENSLISKMSQMTTDDRENLIHKFEEIISPQMIPHDLAAFYLDLANWNLSTAISVFYDQN 63

Query: 390 SPKLP----------SMSVKA---SEGPTGSL--EPGARFDQNWSIVNTGTEQWPGCCRL 524
              L           S +VK     E  +GS    P + F   W +VN G  +WP   RL
Sbjct: 64  GDLLHMEEAFRQTCLSSTVKECTNREAISGSFTYRPNSTFFCGWRVVNDGRFRWPDGTRL 123

Query: 525 IQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVE 704
               G+P+         L    S  + +++  P+  G  K+ F  VT +    G+++WV 
Sbjct: 124 AFVDGDPIDYEVWKDTVLDPDQSENIEIRISCPAEMGDFKARFQFVTPQNFFFGESIWVI 183

Query: 705 VXV 713
           + V
Sbjct: 184 IRV 186


>U88166-3|AAO44910.1|  160|Caenorhabditis elegans Collagen protein
           53 protein.
          Length = 160

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 604 VTVVECPTGRGGK*TGVAPRGS 539
           V + ECPTGR G+  G  P+GS
Sbjct: 2   VCIRECPTGRPGREGGDGPKGS 23


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 207 GEIDQNLLLQFSCMNTTDREELIKQM 284
           G + +NLL     +NT D  EL+KQM
Sbjct: 139 GRLGENLLHVCMLLNTADMNELVKQM 164


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 577 RGGK*TGVAPRGSPPACINLQQPGHCS 497
           R G+ TG   RG P  C + Q+ GH S
Sbjct: 154 RSGRRTGRRGRGGPGHCFHCQEHGHIS 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,434
Number of Sequences: 27780
Number of extensions: 315268
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)