Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_P04
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0896 + 22355097-22355627 36 0.035
09_04_0273 + 16292553-16293002 36 0.047
01_06_0859 + 32519587-32520039 31 1.3
10_08_0861 - 21139173-21139613 30 1.7
04_03_0802 - 19830614-19831275,19831426-19831507 29 4.0
04_03_0119 + 11485753-11486202 29 4.0
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 29 5.3
01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667 28 7.1
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 9.3
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 9.3
>08_02_0896 + 22355097-22355627
Length = 176
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 421 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHL 570
M M+F+ G TILF W + ++ S A+F+ A LY+ L+ R L
Sbjct: 2 MHMSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRL 51
>09_04_0273 + 16292553-16293002
Length = 149
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 421 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGLKYYRKHLLWKTYAGLQY 600
M MTF+ G TILF W ++ S A+ + + Y+ L+ +R + K AG +
Sbjct: 2 MHMTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRV--KLLAGAKP 59
Query: 601 CAVAPP 618
++ PP
Sbjct: 60 ASIPPP 65
>01_06_0859 + 32519587-32520039
Length = 150
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 421 MSMTFHGGYIETILFSWWNVTEVGEFVGSFFAIFIIALLYEGL 549
M MTF+ G ILF+ W G + + A+F +A+L E L
Sbjct: 28 MHMTFYWGKNSEILFTGWPGASGGMYALALAAVFALAVLLEFL 70
>10_08_0861 - 21139173-21139613
Length = 146
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 265 GVHAQHGPYPYCG-VHDVRPSSTGLRRCTAIKPKKLSTFVNINLNCELR 122
GV+ HGPY C + + + + CTA+K L VN+N+ EL+
Sbjct: 84 GVNVGHGPYDCCPLLAGLADADAAVCLCTAVKANVLG--VNLNVPVELK 130
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 747 PMKYRLPCVCCAHHRR 700
P+ Y +PC CC H RR
Sbjct: 137 PVPYPVPCKCCPHRRR 152
>04_03_0119 + 11485753-11486202
Length = 149
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 259 HAQHGPYPYCGVHDVRPSSTGLRRCTAIKP 170
H++ G YP+C P S+ CTA+ P
Sbjct: 66 HSRGGMYPWCSSPASPPPSSATSTCTALSP 95
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Frame = -1
Query: 433 TSWTCPYCGYC-------DHHGLKKCGHCDHSYLCCAQ 341
+SW CP C C D + L C CD +Y C Q
Sbjct: 183 SSWVCPSCRSCEVCRRPGDPNKLMFCKRCDGAYHCYCQ 220
>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
Length = 569
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 688 QAYEELAVQFVVHLLHKYWQLPCLVVLRHNTVVLHMSS 575
QA+++ ++ + + H+ Q PC VVL +V H SS
Sbjct: 463 QAFQQREMEKHMKVFHEPLQCPCGVVLEKEDMVQHQSS 500
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 514 QKMIPQIHQLLLRSTKRRE*FQCSHRETSWTCPYCGYCDHHGLKKCG 374
Q ++ + + L++ KR + CS+ W PYC D G CG
Sbjct: 430 QSLVDTLDKALVKYKKRIQHAPCSNTFRVWCHPYCSRQD-PGTSTCG 475
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 295 GLYVLNDQSHGVHAQHGPYPYCGVHDVRPSSTGLRRCTAIK 173
GL + ++S+ V A GP P ++PSS L T ++
Sbjct: 822 GLEMSTNESNCVRASSGPVPVLETRSIKPSSLSLAIYTLVQ 862
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,175,454
Number of Sequences: 37544
Number of extensions: 484608
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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