Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P03
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    62   1e-10
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           28   1.9  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    28   1.9  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    27   3.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.8  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   5.8  

>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 7/233 (3%)
 Frame = +2

Query: 11  FTLVKSKRSSKHQQTXIPEXXXXXXXXXXXXXXXXXVX-KINTAVEELKISTYFEXVAKS 187
           F +VK  R  K+ +   P+                 +  K++ + E+L+ S + + V   
Sbjct: 3   FIVVKRSRKKKNGRGKFPKVSNTITQGDTDLWSQDTLQRKLDNSREKLEYSEFLKSVQSQ 62

Query: 188 VSTVLQSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFNIKKVFV--HDPIFYKSEC 361
           +S       I + +  GLGRI     S  QL+L   +  IFN++  F   +DP F K + 
Sbjct: 63  LSEFKDP--IHKCIILGLGRIHTLTAS-LQLSLFFEIMKIFNLQPRFCSFYDPAFLKDDV 119

Query: 362 TVLQXXXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVNLRNCVLICNS 541
             L+                 S    TL+Y+PHCP  L   +L +    + R+ ++  N+
Sbjct: 120 EFLENKGFCVLPDPPTP----SCLKYTLLYMPHCPTSLYETWLAAYVNDDPRHFIMCGNN 175

Query: 542 FNSLIENQPSRVLKEIVPFIKNIFPYTSEIY----LENNFQYSDIFNDTSLHY 688
               ++N+PS   KEIV    N++   ++ Y    L   F     FND S H+
Sbjct: 176 LQLYVDNKPS---KEIVSTYPNVYKMCTKNYYTRLLFPEFPNVYAFNDLSFHF 225


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
 Frame = +2

Query: 476 TNNFLWSNWGVNLRNCVLICNSFNSLIENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQ- 652
           T N   S    +L     I ++  SL+E     +  E +  I+ + P T   Y+ NN++ 
Sbjct: 416 TENVTLSTAKAHLTRLKTIVSTDASLVELIEVLIFNEELR-IQTLLP-TMLSYMVNNYES 473

Query: 653 ---YSDIFNDTSLHYFPNDKLLNIDSTFWTKSDKPKYEDNEXFISSHMIEKLNIF*RF 817
                D++         ND+LL +        D+P+Y D+  + +S +   + +F ++
Sbjct: 474 VLLMEDVYETYLAEQVENDRLLRLLLKLEFLDDRPEYVDDPDWSASGVYFVIRLFRKY 531


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +2

Query: 665 FNDTSLHYFPNDKLLNIDSTFWTKSDKPKYEDNEXFISSHMIEKLNIF 808
           F  TS  Y PN          ++   +P Y  +  FIS   I+K N F
Sbjct: 453 FAQTSFDYQPNHPNAISPKAKFSLPSRPSYHKDNSFISKQAIDKSNPF 500


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 548 SLIENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFPND 700
           S+    P  VL E +  I ++  YT+ + LEN    S  F+D  L+  P D
Sbjct: 380 SIYSRYPMGVLGEKLGNITDVEAYTNALLLENGIS-SSPFSDEVLNCLPPD 429


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 623  SEIYLENNFQYSDIFNDTSLHYFPNDKLLNIDSTFWTKSDK 745
            +E Y + +   SDIF DTS+  FP+   L + S    ++D+
Sbjct: 1704 NEFYSQLDTSTSDIFQDTSVDGFPD---LQVSSDINVRNDR 1741


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +2

Query: 614 PYTSEIYLENNFQYSDIFNDTSLHYFPNDKLLNIDSTFWTKSDKPKYEDNEXFISSHMIE 793
           P  S  Y   N  Y+  +N     ++   K  + +  F T+  K  +ED    ++++M+E
Sbjct: 132 PLYSPSYNNTNLLYNFSYNANPFEFWVTRKS-DGEVLFDTRGQKLVFEDQYIELTTNMVE 190

Query: 794 KLNIF 808
             N++
Sbjct: 191 NYNLY 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,415
Number of Sequences: 5004
Number of extensions: 70405
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)