Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_P03
(841 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 40 0.003
05_01_0134 - 904136-904996 37 0.017
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506... 36 0.030
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 30 2.0
03_06_0069 - 31449319-31450368 30 2.0
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 28 8.1
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Frame = +2
Query: 170 EXVAKSVSTVLQSREIVEIVCFGLGRIAECNISRYQL--ALLLSLRDIFNIKKVFVHDP 340
E V+ +S++L + E +++V +GLG S+YQL ALLL +IF I + ++DP
Sbjct: 353 ESVSSHISSMLGAHECIQLVIYGLGSFEFDVKSQYQLAFALLLKADNIFPIGDIEIYDP 411
Score = 38.3 bits (85), Expect = 0.008
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +2
Query: 203 QSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFN--IKKVFVHDPIFYKSECTVLQX 376
+ RE + +V + LG + R++LALLL LRD F + V V DP E ++
Sbjct: 54 RGRERLRVVAYRLGGMRYSWAPRFRLALLLLLRDKFPELVGAVEVVDPTVAPVERRAMEE 113
Query: 377 XXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVN-LRNCVLICNSFNSL 553
V TL+++P+ + N L NW + L V++ +SF+++
Sbjct: 114 LGCVVTASPALCLVV---EQPTLIFMPYADRVFFENLLTLNWTPDQLGKIVVLGHSFSAM 170
Query: 554 IE 559
++
Sbjct: 171 VK 172
>05_01_0134 - 904136-904996
Length = 286
Score = 37.1 bits (82), Expect = 0.017
Identities = 42/172 (24%), Positives = 63/172 (36%), Gaps = 17/172 (9%)
Frame = +2
Query: 236 GLGRIAECNISRYQLALLLSLR-DIFNIKKVFVH----DPIFYKSECTVLQXXXXXXXXX 400
G+G SR QLAL LR D+ + + H DP+ +EC
Sbjct: 101 GVGSFENSPSSRLQLALAALLRRDLLLLPESSAHADLFDPVLSAAECAAAAALGFTVPGV 160
Query: 401 XXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGV--NLRNCVLICNSFNSLI----EN 562
+ TL Y+PHC L + L +NW LR+ ++ NSF + EN
Sbjct: 161 NDGCRRRADEP--TLFYMPHCEASLYDALLAANWEPPSQLRHVCVLGNSFRNYAIQAEEN 218
Query: 563 QPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSD------IFNDTSLHYFPND 700
+ + F + + + D FN+TS H+F D
Sbjct: 219 RSGPAARAKHVLAAERFAWEERVSEKGGVDDDDDDVFNRAFNETSWHFFEVD 270
>04_04_0964 -
29749624-29749649,29749742-29749945,29750036-29750634,
29750742-29750826,29750914-29751562,29751568-29751643,
29753891-29753957,29754097-29754998,29756579-29756790
Length = 939
Score = 36.3 bits (80), Expect = 0.030
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 170 EXVAKSVSTVLQSREIVEIVCFGLGRIAECNISRYQLALLLSLRD--IFNIKKVFVHDP 340
+ + +S++L + E +++V +G+G S+YQ+A L L++ IF I + ++DP
Sbjct: 435 QSICSHISSMLGAHECIQLVVYGIGSFEFDVKSQYQIAFALLLKEDNIFPISDIEIYDP 493
Score = 35.5 bits (78), Expect = 0.053
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Frame = +2
Query: 203 QSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFN--IKKVFVHDPIFYKSECTVLQX 376
+ E + +V + LG + R++LA+LL LRD F + + V DP E ++
Sbjct: 144 RGHERLRVVAYRLGGLRYSWAPRFRLAVLLLLRDKFPELVGAIEVVDPTVAPVERRAMEE 203
Query: 377 XXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVN-LRNCVLICNSFNSL 553
V TL+++P+ + N L NW + L V++ +SF+++
Sbjct: 204 LGCIVTTSPALCLVVEEP---TLIFMPYADRVFFENLLILNWSPDKLGKIVVLGHSFSTM 260
Query: 554 IE 559
++
Sbjct: 261 VK 262
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 518 NCVLICNSFNSLIE-NQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYF 691
+C+ C+ S+++ N+ + E++ KNI PY + L NN ND S H F
Sbjct: 620 DCIKACSPLQSMVDTNEEMLLAHEVMNHTKNIKPYHVDDSLRNN-------NDISFHPF 671
>03_06_0069 - 31449319-31450368
Length = 349
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = -2
Query: 318 LILKISLSDRRSANWYLDILHSAM----RPSPKQTISTISLDCKTVLTDL 181
L L S S +A++Y D LH+ + RP ++T SL C T +T L
Sbjct: 245 LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYDVATASLPCTTAVTSL 294
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = -2
Query: 327 NTFLILKISLSDRRSANWYLDILHSAMRPSPKQTISTISLDCKTVLTDLATXSKYV 160
N L++ +LSD R+ + Y D+L P P Q +T++ +T+ A ++ V
Sbjct: 16 NRDLVVADALSDDRAKDAYGDVLGMVFSPIPFQPDATVATHEPPAVTEAAEPAEVV 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,797
Number of Sequences: 37544
Number of extensions: 351937
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -