Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P03
         (841 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)                 145   5e-35
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   4.7  

>SB_19785| Best HMM Match : SRR1 (HMM E-Value=8.8e-19)
          Length = 735

 Score =  145 bits (351), Expect = 5e-35
 Identities = 70/193 (36%), Positives = 112/193 (58%), Gaps = 2/193 (1%)
 Frame = +2

Query: 203 QSREIVEIVCFGLGRIAECNISRYQLALLLSLRDIFNIK--KVFVHDPIFYKSECTVLQX 376
           +  E+ EIVC+G+G I++C I+RYQ ALLL L+D F +     +V++P+F K +  ++Q 
Sbjct: 96  EEAELNEIVCYGVGCISKCPIARYQFALLLLLKDDFQVSCDHCWVYEPLFSKDDANIVQN 155

Query: 377 XXXXXXXXXXXXXYVISDSGVTLVYLPHCPKQLTNNFLWSNWGVNLRNCVLICNSFNSLI 556
                              G +L  + HC K L NN LW+NWG +L++ +++ NSF+S  
Sbjct: 156 FDCSMIRVNEEGKR--KAIGKSLFIMLHCGKPLYNNVLWANWGQDLKDVLILGNSFSSYD 213

Query: 557 ENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHYFPNDKLLNIDSTFWTK 736
           +    + L +   +I  + PY  EI ++NNF+++DIFN+TSLH FP+DKL+      W  
Sbjct: 214 DRAVGKQLSKQATYIAKVLPYIKEIPVKNNFRHNDIFNNTSLHSFPHDKLMKAPEGLWAD 273

Query: 737 SDKPKYEDNEXFI 775
             +P+Y+D    I
Sbjct: 274 CVEPQYDDEAEII 286


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = -2

Query: 411 PSLFSSITLMPSSWSTVHSDL*KIGS*TNTFLILKISLSDRRSANWYLDILHSAMRPSPK 232
           PS F S + +PS + T  S L    S  + FL    SLSD  + +   D L S+  PS  
Sbjct: 674 PSDFLSSSSLPSDFLTSSSLLSDFLSLPSDFLTSSSSLSDFLT-SLPSDFLTSSSLPSDF 732

Query: 231 QTISTISLDCKT---VLTDLATXSKYVEIFNSSTAV 133
            T S+   D  T    L+D  T S  + +F +S+++
Sbjct: 733 LTSSSSLSDFLTSSSSLSDFLTSSSSLSVFYTSSSL 768


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,771,765
Number of Sequences: 59808
Number of extensions: 439406
Number of successful extensions: 929
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)