Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P03
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    31   1.3  
Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 554 IENQPSRVLKEIVPFIKNIFPYTSEIYLENNFQYSDIFNDTSLHY 688
           I N PS  LK+     KN+ P  +++  E   Q +  F+ ++LH+
Sbjct: 92  INNFPSENLKKTETIEKNVLPSPTDVAREKTLQMAASFDKSALHH 136


>Z70782-2|CAA94839.1|  387|Caenorhabditis elegans Hypothetical
           protein R04B5.3 protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 650 QYSDIFNDTSLHYFPNDKLLNIDSTFWTKSDKPKYEDNEXFISSHMIEKLNIF 808
           Q  D     +L  F  D+ L ID T   K  KP  E N+ F      EK+ ++
Sbjct: 236 QSGDYIQIDNLEEFFTDEQLKIDGTKLAKLFKPSLEQNDNFHKLLKSEKIEMY 288


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 644 NFQYSDIFNDTSLHYFPNDKLL-NIDSTFWTKSDKPKY 754
           NF+YS+I  D S++   ++ LL N+   +  + D P++
Sbjct: 229 NFKYSEIETDCSVYSISSETLLANVGEVYKIREDDPRH 266


>AL032655-1|CAA21726.1|  995|Caenorhabditis elegans Hypothetical
           protein Y6B3B.3 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -1

Query: 244 TKSKTNYFNYFSGLQNGTHGFSNVLKIC*NF*FLN--SRIYF 125
           T++ +    + SGL NG H FSN+LK   N  FL    R++F
Sbjct: 145 TETSSLIRQHTSGLWNGYHDFSNLLKDIKNKFFLRIILRVFF 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,067
Number of Sequences: 27780
Number of extensions: 368427
Number of successful extensions: 851
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)