Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_P01
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    33   0.058
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.0  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   8.8  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 3/119 (2%)
 Frame = +3

Query: 87  MSLQWTIIATFLYTEIAVVLLLTLPIASPSR---WQKFFKSKFLAYISGQASIYFXXXXX 257
           M++ + I+   L  EI   ++L+LP+    R         S F   +     I       
Sbjct: 1   MTIYYMIVFMLLMVEIVSFVILSLPLPLKVRRAILNAISNSPFAGRVKHVLKITIICILI 60

Query: 258 XXXXXXXDAIREMQKYSNIEPSDHQHLDAEMQGNMRLFRAQRNFYISGFALFLLVVIRR 434
                    +R  ++Y     +      A        F AQRN Y+ G ALFL +V+ R
Sbjct: 61  LFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSLVVNR 119


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 27/94 (28%), Positives = 43/94 (45%)
 Frame = +3

Query: 456  LATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQSKKEIEDLRTQIXXXXXXXXXXXXX 635
            L   L  SE NF             LE+   G+E++KKEI +L +++             
Sbjct: 1342 LEKALKDSEKNFLRKEAEMTENIHSLEE---GKEETKKEIAELSSRL-------EDNQLA 1391

Query: 636  XXAVKSQAEGLNKEYDRLAEEHSKLQKKLTVSGE 737
               +K+Q + LN+E  RL E+  K ++ L +S E
Sbjct: 1392 TNKLKNQLDHLNQEI-RLKEDVLKEKESLIISLE 1424


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 152 NFADSQSEQMAEVLQ-IEISSLHKRAGIYLFSDSHW 256
           N  +   E +A  LQ IE+ S+ +R  +Y   D +W
Sbjct: 22  NEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENW 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,752
Number of Sequences: 5004
Number of extensions: 48525
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)