Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_P01
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0676 - 35460281-35460648,35462097-35462382 34 0.11
06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048 31 0.75
03_02_0317 - 7414477-7414555,7414646-7414701,7415877-7416024,741... 31 0.75
12_02_0437 - 19084990-19087695 29 4.0
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 29 4.0
04_04_0063 - 22441549-22442961 29 5.3
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420... 28 7.0
04_03_0349 - 14738360-14738385,14738762-14738807,14738887-147391... 28 7.0
03_05_0472 - 24655384-24655764,24655904-24656119,24656197-246563... 28 7.0
09_04_0736 - 19815427-19815642,19815782-19816903,19817006-198177... 28 9.2
03_02_1029 - 13488535-13493037 28 9.2
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 9.2
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 34.3 bits (75), Expect = 0.11
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Frame = +3
Query: 399 GFALFLLVVIRRLVQMISQLATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQSKK--- 569
GF LFL VI RL + +L TL + + EK+ + KK
Sbjct: 96 GFTLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFREKEEKSSSEIKKLHQ 155
Query: 570 -------EIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRLAEEHSKLQKKLTV 728
++ L+++ A++ Q+E L EYDRL E++ LQ +L
Sbjct: 156 EIAKLNESMKKLKSESEDHERKVLEAEAHVNALQKQSEELLLEYDRLLEDNQILQSQLHY 215
Query: 729 SG 734
G
Sbjct: 216 KG 217
>06_02_0367 - 15222703-15223088,15224761-15224826,15226748-15227048
Length = 250
Score = 31.5 bits (68), Expect = 0.75
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = +3
Query: 393 ISGFALFLLVVIRRLVQMISQLATLLAQSEANFXXXXXXXXXXXXLLEKQGTGEEQS--- 563
I G++LFL +VI RL I ++ L EA + ++
Sbjct: 121 IKGYSLFLALVIDRLHNYIREVRGLKRNLEAASKLNKTLDEAKLIGSSDESKTYQKDIAS 180
Query: 564 -KKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRLAEEHSKLQKKL 722
+EI+ ++ Q+ A + Q+EGL EY+ L E++ L +L
Sbjct: 181 LNEEIKKMKRQLKEKANEAKDAEAKALAAQKQSEGLMIEYNHLVEDNKHLHDQL 234
>03_02_0317 -
7414477-7414555,7414646-7414701,7415877-7416024,
7416376-7416380,7416512-7416594,7416707-7416878
Length = 180
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 87 MSLQWTIIATFLYTEIAVVLLLTLPIASPSRWQ 185
M+LQW I+A + E AV ++LTLP R Q
Sbjct: 1 MALQWMILACVVAAEAAVAVMLTLPAPRAVRKQ 33
>12_02_0437 - 19084990-19087695
Length = 901
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 292 RCKNIQILNRQTTSISTPKCKVT-*DCFVHRETSTYLALHFSSLSSSVVWFK*FH 453
R KN+Q L+ + TS+S C++T C H ST L+ +S S +V + H
Sbjct: 626 RLKNLQTLHLRRTSVSELPCEITLLACLRHLSVST--DLYGTSFSGNVYGLRSLH 678
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 84 FHYFFNTVINYTMQQTIVDEQQTMTKF 4
FH+FF T+ N T Q+ ++ +T+ KF
Sbjct: 157 FHHFFRTISN-THQENVITSMETVMKF 182
>04_04_0063 - 22441549-22442961
Length = 470
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 549 GEEQSKKEIEDLRTQIXXXXXXXXXXXXXXXAVKSQAEGLNKEYDRLAEEHSKLQKKL-T 725
GEE+S+K ++DL + +++ E N E +RL E + +L
Sbjct: 120 GEEKSRKALDDLSVALSDVTMEAKQVKMWLSEAQAELEAANAEAERLRHELDAAEARLRD 179
Query: 726 VSGEGD 743
VS E D
Sbjct: 180 VSDEHD 185
>04_03_0379 +
15141127-15141231,15141566-15141769,15141856-15142037,
15142898-15143036,15143111-15143299,15143943-15144050,
15144143-15144222,15144549-15144600,15144731-15144799,
15144876-15144910,15145351-15145510,15147414-15147470,
15147566-15147622,15147971-15148027,15148126-15148182,
15148551-15148670,15148760-15148996,15149550-15149591
Length = 649
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 84 FHYFFNTVINYTMQQTIVDEQQTMTKF 4
FH+FF TV N T Q+ ++ +T+ KF
Sbjct: 156 FHHFFRTVSN-THQEHVISYMETIMKF 181
>04_03_0349 -
14738360-14738385,14738762-14738807,14738887-14739123,
14739213-14739332,14739702-14739758,14740262-14740318,
14740412-14740468,14742372-14742531,14742972-14743006,
14743083-14743151,14743282-14743333,14743660-14743739,
14743832-14743939,14744583-14744771,14744846-14744984,
14745845-14746026,14746113-14746316,14746651-14746755
Length = 640
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 84 FHYFFNTVINYTMQQTIVDEQQTMTKF 4
FH+FF TV N T Q+ ++ +T+ KF
Sbjct: 156 FHHFFRTVSN-THQEHVISYMETIMKF 181
>03_05_0472 -
24655384-24655764,24655904-24656119,24656197-24656321,
24656432-24656621,24656817-24656911,24657230-24657454,
24657940-24658003
Length = 431
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 385 FLCARNNLMLPCISASRCWWSDGSIFE--YFCISRIASSRHNTSTPMR 248
F+CA +P +SA R W ++F Y I+ + S R +TP +
Sbjct: 151 FVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITTPAK 198
>09_04_0736 -
19815427-19815642,19815782-19816903,19817006-19817707,
19817808-19817855,19817959-19818201,19819035-19819391
Length = 895
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 297 QKYSNIEPSDHQHLDAEMQGNMR 365
++YS I PS++ H DA+ +G++R
Sbjct: 594 RRYSMITPSNNHHRDADHRGSLR 616
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 110 RDVSLYRDRSRPPFNFADSQSEQMAEVLQIEISSL 214
R V+LYR +P FA S + +E+ QIE+S +
Sbjct: 494 RTVTLYRGPEQPVVFFAPPTSVRSSELHQIELSEI 528
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 546 TGEEQSKKEIEDLRTQI 596
TG EQ KK++ED RTQ+
Sbjct: 850 TGSEQVKKQLEDWRTQL 866
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,965
Number of Sequences: 37544
Number of extensions: 315350
Number of successful extensions: 704
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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