Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O23
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   3.1  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   3.1  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   3.1  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
 Frame = -2

Query: 364  VNFGMATRTNHMSWM-RPNRYYGCNNLWPCCCW 269
            +NFG       +SW+ R     G   +W CC W
Sbjct: 2042 LNFGDEAGAGVVSWIVRACIVQGFQQIWACCLW 2074


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
 Frame = +1

Query: 241 AFQPLHTSVPNNNRATNCYNRSTGWAASNSYDLS*LPCRN*H----INTNKTWSHCIHNW 408
           A + L  SV  NN   +C  R   WA+ N      L C   H     + +K  S  +  W
Sbjct: 9   AIRELVQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEW 68

Query: 409 CNYIPFRMYMW 441
            N    +M  W
Sbjct: 69  SNDQIEKMKHW 79


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 271 NNNRATNCYNRSTGWAASNSYDLS*LPCRN*HINTNKTWSHCIHNWCNY 417
           N+N ATN  + S G   +NSY  +     N + N+N T+    +N+ NY
Sbjct: 23  NSNTATNAPSYSVGGTTANSYSSN---SYNDNNNSNSTYGSS-NNYGNY 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,459
Number of Sequences: 5004
Number of extensions: 46320
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)