Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_O23
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 37 0.014
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 34 0.076
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 33 0.13
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 32 0.31
AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical... 29 2.2
AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical... 29 2.2
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical... 29 2.2
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam... 29 2.2
AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gam... 29 2.2
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein. 29 2.9
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ... 29 2.9
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 29 2.9
AL033512-2|CAA22074.1| 390|Caenorhabditis elegans Hypothetical ... 29 3.8
AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical... 28 5.0
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 28 6.6
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 28 6.6
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 338 CPSCHAEINTSTQTKPGLIAYITXXXXXXXXXXXXXXXXXXXXDSCMDVHHKCPHCDTYL 517
CP C +I T T++ GL+ +I SC D+ H CP+C +
Sbjct: 77 CPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLR-SCKDIIHTCPNCRAMI 135
Query: 518 GRYRR 532
G +RR
Sbjct: 136 GVHRR 140
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 34.3 bits (75), Expect = 0.076
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 467 DSCMDVHHKCPHCDTYLGRYRR 532
DSC D HH CP C+ LG +R
Sbjct: 134 DSCKDAHHYCPRCNALLGIKKR 155
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 467 DSCMDVHHKCPHCDTYLGRYRR 532
D +DV+H CP C +LGR+ R
Sbjct: 96 DQLLDVNHSCPACKKFLGRFNR 117
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 476 MDVHHKCPHCDTYLGRYRR 532
MDVHH+CP+C+ LG+ R
Sbjct: 69 MDVHHRCPNCNKSLGKRDR 87
>AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical
protein Y39A1A.15c protein.
Length = 903
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 262 SVPNNNRATNCYNRSTGWAASNSYDLS*LPCRN*HIN 372
S+P N R +C N S+ WA+ N + + C H N
Sbjct: 626 SIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRN 662
>AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical
protein Y39A1A.15b protein.
Length = 951
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 262 SVPNNNRATNCYNRSTGWAASNSYDLS*LPCRN*HIN 372
S+P N R +C N S+ WA+ N + + C H N
Sbjct: 674 SIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRN 710
>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
protein Y39A1A.15a protein.
Length = 1107
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 262 SVPNNNRATNCYNRSTGWAASNSYDLS*LPCRN*HIN 372
S+P N R +C N S+ WA+ N + + C H N
Sbjct: 830 SIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRN 866
>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
1B protein.
Length = 1107
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 262 SVPNNNRATNCYNRSTGWAASNSYDLS*LPCRN*HIN 372
S+P N R +C N S+ WA+ N + + C H N
Sbjct: 830 SIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRN 866
>AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gamma
1A protein.
Length = 952
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 262 SVPNNNRATNCYNRSTGWAASNSYDLS*LPCRN*HIN 372
S+P N R +C N S+ WA+ N + + C H N
Sbjct: 675 SIPGNGRCADCGNPSSEWASINLGIIICIECSGIHRN 711
>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
Length = 1110
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 551 DHKGRFIDDSDRGKYRNEDIYGVRPYSCQ 465
D + F + SDR K++N ++PYSCQ
Sbjct: 312 DCEKAFSNASDRAKHQNRTHSNLKPYSCQ 340
>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
protein Y47D3A.6a protein.
Length = 1109
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 551 DHKGRFIDDSDRGKYRNEDIYGVRPYSCQ 465
D + F + SDR K++N ++PYSCQ
Sbjct: 311 DCEKAFSNASDRAKHQNRTHSNLKPYSCQ 339
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/66 (25%), Positives = 22/66 (33%)
Frame = +2
Query: 335 ICPSCHAEINTSTQTKPGLIAYITXXXXXXXXXXXXXXXXXXXXDSCMDVHHKCPHCDTY 514
+CP C I TS T G+ ++ D DV H CP+C
Sbjct: 35 VCPKCQTTIMTSVTTHIGMCWWLICFFGTFLFCWPILICLCF--DVSKDVDHNCPNCGLL 92
Query: 515 LGRYRR 532
L R
Sbjct: 93 LATSNR 98
>AL033512-2|CAA22074.1| 390|Caenorhabditis elegans Hypothetical
protein Y49A3A.3 protein.
Length = 390
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -1
Query: 266 TEVCKGWKALHPPL 225
TE +GWK++HPPL
Sbjct: 331 TEATEGWKSIHPPL 344
>AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical
protein Y87G2A.19 protein.
Length = 110
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 479 DVHHKCPHCDTYLGRYRR 532
D H CP C ++G YRR
Sbjct: 88 DAEHYCPSCRAWIGTYRR 105
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/67 (22%), Positives = 24/67 (35%)
Frame = +2
Query: 332 MICPSCHAEINTSTQTKPGLIAYITXXXXXXXXXXXXXXXXXXXXDSCMDVHHKCPHCDT 511
+ C C + + + GL A+++ S D H CP C
Sbjct: 952 LFCSRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFL-SSFSDFVHICPLCSH 1010
Query: 512 YLGRYRR 532
+GR+RR
Sbjct: 1011 IMGRFRR 1017
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/67 (22%), Positives = 24/67 (35%)
Frame = +2
Query: 332 MICPSCHAEINTSTQTKPGLIAYITXXXXXXXXXXXXXXXXXXXXDSCMDVHHKCPHCDT 511
+ C C + + + GL A+++ S D H CP C
Sbjct: 952 LFCSRCRNIVESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFL-SSFSDFVHICPLCSH 1010
Query: 512 YLGRYRR 532
+GR+RR
Sbjct: 1011 IMGRFRR 1017
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical protein
C14C10.4 protein.
Length = 1058
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 162 MYGARQMFYSLRLLLHLATRKQWGV*GLPALTHLSTQ 272
++ R L LL LATRK W + + +L LS +
Sbjct: 990 VFNGRASTLDLNNLLELATRKLWNINDIESLQELSNE 1026
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,797
Number of Sequences: 27780
Number of extensions: 270208
Number of successful extensions: 637
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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