Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O20
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    29   0.41 
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   1.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   2.2  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   6.7  
SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    25   8.8  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 315 PRWCYTIVSNSIACWIKNYLSLLYDIVILVL 407
           PR C+T++  S A W+  ++ LL +++ LVL
Sbjct: 586 PRRCFTLLFPSGATWVLFFVLLLLNVIDLVL 616


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 293 KPLSSATYVTVYVIPSGATQEYDPLITID--SSSVPTLMTSPCSS 165
           +PL SA YV V  +     +E+D  + ++   S+V T   SPC++
Sbjct: 559 RPLRSAEYVRVCELKCLQEEEFDNKVLLEQVESNVQTDHNSPCNT 603


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 315 PRWCYTIVSNSIACWIKNYLSLLY-DIVILVLLAGIIKFRY 434
           P+W Y IV+ S+     N+ SLL+   V + ++  ++++RY
Sbjct: 47  PKWAYKIVTYSLTIQF-NFKSLLFLFFVSICVVILVVRYRY 86


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +1

Query: 181 VINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKGFQPSIEQGP 318
           ++++G DDE+I +    + + PD       Y       + ++E GP
Sbjct: 206 LVSIGKDDEAIQVMCKNAELPPDSDIIQTEYKQIKSDCEAAVEGGP 251


>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 297 AIYRARPRWCYTIVSNSIACWIKNYLSLLY 386
           + +   PR    IVS  IA + K YL LLY
Sbjct: 238 SFFAENPRKVENIVSKQIAFFRKLYLPLLY 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,131
Number of Sequences: 5004
Number of extensions: 37051
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)