Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_O20
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    31   0.48 
Z46787-18|CAO78705.1|  805|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z35596-4|CAO78715.1|  805|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical ...    27   6.0  
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    27   7.9  

>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 67  PKDDNVQLLK-FDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 207
           P+D N   LK   + N     Y+ +++Q D  ++D +G VIN   DD+
Sbjct: 673 PEDSNDYFLKSMMAKNTERTVYKAMFDQFDSPEQDARGSVINEKEDDD 720


>Z46787-18|CAO78705.1|  805|Caenorhabditis elegans Hypothetical
           protein C30D11.1d protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 58  PQGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 207
           P+  +DD V     D ++D     RFL +Q+ GS R    +V+N   D+E
Sbjct: 14  PEDEEDDEVFFEPADKNDD---KQRFLPKQSRGSSRFVSEDVLNNSDDEE 60


>Z35596-4|CAO78715.1|  805|Caenorhabditis elegans Hypothetical
           protein C30D11.1d protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 58  PQGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 207
           P+  +DD V     D ++D     RFL +Q+ GS R    +V+N   D+E
Sbjct: 14  PEDEEDDEVFFEPADKNDD---KQRFLPKQSRGSSRFVSEDVLNNSDDEE 60


>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 312 RPRWCYTIVSNSIACWIKNYLSLLYDIVILVLLAGIIKFRY 434
           R  W  ++V    A   +NY ++ Y IVI+   AG  ++ Y
Sbjct: 128 RSNWSQSVVKIENALH-RNYYTIAYSIVIIAYFAGFAEYLY 167


>AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.2 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 142 RIGTCKNRVRHYHCRISR 89
           ++  CK+ +RH+HCR  R
Sbjct: 278 KVSKCKHHLRHHHCRKHR 295


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 73  DDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 207
           + +  L+ FDS ND   S   ++    G+    QG+ + +   D+
Sbjct: 642 EGSTSLVDFDSTNDTTASLADVFANNSGTGLGAQGDEVEIANKDD 686


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,401
Number of Sequences: 27780
Number of extensions: 217074
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)